ISMba15
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro Methanosarcina barkeri Wiesmoor |
DNA section
IS Length : 1251 bp
Ends
IR Length : 11/16
IRL : GGGTCCTCTTAAACTCACTCTCAAACTAGAGGTTATTACTTATTTGTTCC
IRR : GTCCCCTCTTAATTTCTTCATTCAGAGAAGGCTTGCAATTCCTTCCTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCTCGTTCATTTTTTAATA | TATTTTTTAAATATAAAAAA | 0 | |
TATTCTTATTAAAATAAATA | TATAAAATAAATTAAAAATT | 0 | |
CAAGGGGTCTATAATAGATA | TAATAATAGAATAAAAATGG | 0 | |
AACTGGTACTTCTATTTTTA | TATAAAAATTACTAATTTAA | 0 | |
CAGCTTTGCTTTTCATTATA | TATTTTCATTACAGAAGACC | 0 | |
GATAACTAGTATTAATATTA | TATATTAATATGCAAAATAT | 0 | |
TGCACATCGTTTTAGTATTA | TATTTATCACATATGTACTG | 0 |
DNA sequence
GGGTCCTCTTAAACTCACTCTCAAACTAGAGGTTATTACTTATTTGTTCCATTAATTAAGGTTATTAGTAGTTCCCCTCAAAAAAGTACATTCAATTTTT
CGTCTGAATTTTAATTAATGTCATAAAAAATCGTAAATTTTATTGAGAAGGATTTTCAATCCTTCTCTGGTGATTATTACGAAACCTCCACTTATACCAC
TAAATGAAGATTTCAAATGGCAATTGTTGTCCGAAATATTAAATGTTTTTGATTTGAGATTCTGTAAGCAAACTCTTACAAGGAGGGGCATTGTGCCCCT
CCACAGATCAGTACCTACTATAAAAATTGTTCTTCTAAGCATGTTTTTTTCTTGTGAAATCTCTTATTCTATAAAGGAATTAAAAGAAAGAGAAATCTTG
AGAAACTTTTTAAAAATCAGTTTAGTACCAACTGAAAAGGAAGTTTATGGCATTCTTAGTAAGTATGAACCCCAAGAGTTTACTGCTTTTGTTTTTGAAA
TATTGAATGATTTATGCCCTAAGAGAAAAAATGGATCAAGAGACATTATTATTGATAGTACTGACATAAACCTTAACCTGAACTGGCACGCTAAAAAGAT
TACCAAAGAAAGCCTAAAAAACAAAGAATACAAGTGGGGCCATTCAACCCATAGAGGTTTCTTCATTGGTATGAAACTTACTCTTGCACTTGATTCTCAA
ACATTAAAACCTTTAGCGTTTCTGATTAATGAAGCAAATGTAGCAGAATCTAAAATTTATCCTGAAATACTTAAAGAACTTAAAAGAAAGAGAATAATAA
AAGCAGGTGACGTTATCTATGCTGATAGAGGATACTATTCCTATGAAAACTACGTTATATCTGTAAGAAATTTTAAGGTAGTACCTTTAATTTTTCCAAG
GAAAAACTGTAATTTTAAGAAACTTTTCAATATGTTTAGATATCCTCTGAAAATATTTGATTTAAGAAGAAATACTGAAAAAGAAATTAAATTCTACAAA
GAAATAATTGCAAAGTTTAAAGAGTTAATAAGCAAATGGAAAGAACTCAGATCTGTAAGGTCAATTATAGAAGATGTATTCAAAATAGCGAAGAAAGCAT
ACTCTATGGAGAATTTACACAGATATACAAGGAGTTCTGTCCAAAAATACTGTTCTTTAGCTGTACTTTTAGTAGGGGTAACTGTAAATTACGGTATTAA
TGAAAGGAAGGAATTGCAAGCCTTCTCTGAATGAAGAAATTAAGAGGGGAC
CGTCTGAATTTTAATTAATGTCATAAAAAATCGTAAATTTTATTGAGAAGGATTTTCAATCCTTCTCTGGTGATTATTACGAAACCTCCACTTATACCAC
TAAATGAAGATTTCAAATGGCAATTGTTGTCCGAAATATTAAATGTTTTTGATTTGAGATTCTGTAAGCAAACTCTTACAAGGAGGGGCATTGTGCCCCT
CCACAGATCAGTACCTACTATAAAAATTGTTCTTCTAAGCATGTTTTTTTCTTGTGAAATCTCTTATTCTATAAAGGAATTAAAAGAAAGAGAAATCTTG
AGAAACTTTTTAAAAATCAGTTTAGTACCAACTGAAAAGGAAGTTTATGGCATTCTTAGTAAGTATGAACCCCAAGAGTTTACTGCTTTTGTTTTTGAAA
TATTGAATGATTTATGCCCTAAGAGAAAAAATGGATCAAGAGACATTATTATTGATAGTACTGACATAAACCTTAACCTGAACTGGCACGCTAAAAAGAT
TACCAAAGAAAGCCTAAAAAACAAAGAATACAAGTGGGGCCATTCAACCCATAGAGGTTTCTTCATTGGTATGAAACTTACTCTTGCACTTGATTCTCAA
ACATTAAAACCTTTAGCGTTTCTGATTAATGAAGCAAATGTAGCAGAATCTAAAATTTATCCTGAAATACTTAAAGAACTTAAAAGAAAGAGAATAATAA
AAGCAGGTGACGTTATCTATGCTGATAGAGGATACTATTCCTATGAAAACTACGTTATATCTGTAAGAAATTTTAAGGTAGTACCTTTAATTTTTCCAAG
GAAAAACTGTAATTTTAAGAAACTTTTCAATATGTTTAGATATCCTCTGAAAATATTTGATTTAAGAAGAAATACTGAAAAAGAAATTAAATTCTACAAA
GAAATAATTGCAAAGTTTAAAGAGTTAATAAGCAAATGGAAAGAACTCAGATCTGTAAGGTCAATTATAGAAGATGTATTCAAAATAGCGAAGAAAGCAT
ACTCTATGGAGAATTTACACAGATATACAAGGAGTTCTGTCCAAAAATACTGTTCTTTAGCTGTACTTTTAGTAGGGGTAACTGTAAATTACGGTATTAA
TGAAAGGAAGGAATTGCAAGCCTTCTCTGAATGAAGAAATTAAGAGGGGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1065 bp | 354 aa | 170 | 1234 | + | No |
Chemistry : DDE
ORF sequence :
MIITKPPLIPLNEDFKWQLLSEILNVFDLRFCKQTLTRRGIVPLHRSVPTIKIVLLSMFFSCEISYSIKELKEREILRNFLKISLVPTEKEVYGILSKYE
PQEFTAFVFEILNDLCPKRKNGSRDIIIDSTDINLNLNWHAKKITKESLKNKEYKWGHSTHRGFFIGMKLTLALDSQTLKPLAFLINEANVAESKIYPEI
LKELKRKRIIKAGDVIYADRGYYSYENYVISVRNFKVVPLIFPRKNCNFKKLFNMFRYPLKIFDLRRNTEKEIKFYKEIIAKFKELISKWKELRSVRSII
EDVFKIAKKAYSMENLHRYTRSSVQKYCSLAVLLVGVTVNYGINERKELQAFSE
PQEFTAFVFEILNDLCPKRKNGSRDIIIDSTDINLNLNWHAKKITKESLKNKEYKWGHSTHRGFFIGMKLTLALDSQTLKPLAFLINEANVAESKIYPEI
LKELKRKRIIKAGDVIYADRGYYSYENYVISVRNFKVVPLIFPRKNCNFKKLFNMFRYPLKIFDLRRNTEKEIKFYKEIIAKFKELISKWKELRSVRSII
EDVFKIAKKAYSMENLHRYTRSSVQKYCSLAVLLVGVTVNYGINERKELQAFSE
Blast result :
Comments
ISMba15 is 44% aa similar to ISVa2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank