ISMma22
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 1658 bp
Ends
Left end : AAGCAAGTAAGGGCTAATCCCCGCCATTTCAATGGTGGGATACAGCCCGTCAACTTCCTAACATAATAGCGTTAAATTAATATACACATGGTTACCATAT II struct. : Yes
Right end : GATAGAGATCACAATGCCGCTATTAACATTATGAGATTGGGATTACAATCTCTCCAGAATTCTGGTAGATGCCCGTCACTTCAGTGATGGGAGTAGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TATTATTCAT | TTAT | CCCCTTTCTA | TCAC |
DNA sequence
AAGCAAGTAAGGGCTAATCCCCGCCATTTCAATGGTGGGATACAGCCCGTCAACTTCCTAACATAATAGCGTTAAATTAATATACACATGGTTACCATAT
GTATATACTAACATGGCAGGAAAAGAACATTGGATAAGTGCAAGAGGTTGTGTATATAACACAAATTACCATTTCGTATGGTCTACAAAATATAGAAGAA
AAATCCTTATTGGAAAAATAGCTGAAGATCTGAAAGAGCTTCACGAACAGATAGCAAAAGAAAAAGGTGTAACTCTTGTCACTCAAGAAGTAATGCCGGA
TCATGTGCATCTTTTCATTATCATGCATCCCAAGTTTGCACCTGCTGATATTGTGAAAATATTCAAAGGAATTACTGCAAAGAAACTCTTTGAAATGCAT
CCTGAAATAAAGAGCAGATTATGGAATGGTCATCTCTGGAATCCGTCTTATTATGTTGGAACATGTGGAGATACAACAAAAGAAACTGTAAAAATGTATA
TTGAAACTCAAAAGGTGAAATGAATGTTAAAAGTGCTTCGGTATAGAGTCTATCCTACAAAGGCTCAAAAAACAACTATGAATAATACTCTTGAGCTTTG
TAGGTGGACATATAACGAGACACTTGCACTCAGGAAAGATGCATGGGAGTCAGAGCAAAAGAATATAGGGTACTATGATTCTAAGAAAATGATCCCTGAA
TGGAAAAAAGAAAAACCTGAATTGAAAACAGTTCATTCACAGGTATTACAGGAAGTAATCAAGAGAGTAGATCTTGCCTTTCAAGCCTTTTTCCGTAGAG
TTAAAACAGGAGAGAAGGCAGGCTATCCTAGATTCAGAGGATACGGAAGGTATGATAGTTTTACCTATACTCAATCAGGCTTTTCTCTGGATTCTGATAG
GTTAACACTATCAAAAATAGGTGATATTAAAATCAAATTACATAGACCAGTAGAAGGTGAAATTAAAAGACTCAATGTTCGTAAGATGCCTACAGGAAAA
TGGTTTGTTTCTTTTCTGGTTGAAACTGATACTCCTTTGGAATTACAAAAAACAGGATTATCAGTAGGTGTAGACGTAGGTATCAAGAGCTTCTTAACGC
TTTCTGATGGTAATTATGTACCTAATCCTAGATTCTTTGTTACAGAAGAAAAGTTTCTGGCAAAAGTCCAAAGAAAACTCTCCAAACTTGAAAAAGGAAC
ACCTGAAAGAGCAAAAGCCTTGAAAGCTGTTCAACGTGTTCACGAAAGAATCTCAAACAAGAGAGAGGATTTTGTACAGAAAGTAAGTCTTAATCTGGTC
AGGAATTATGACCTGATTACTTTTGAAGATTTGAACATTAAAGGTATGATTAAAAACCACAAACTAGCAAAACACATAGCTGATGTTGCATGGAATAAGC
TTGTAACTATCACGTCTTACAAGGCAGAATGGGCTGGTAAACGTGTAGAGCTTGTCAATCCATGTAATACATCACAAATGTGCTCTGGATGCGGTGAAAT
AGTTAAAAAAGAACTATCAGAGAGAATACACAGTTGTCCTTACTGTGGTCTTACTCTTGATAGAGATCACAATGCCGCTATTAACATTATGAGATTGGGA
TTACAATCTCTCCAGAATTCTGGTAGATGCCCGTCACTTCAGTGATGGGAGTAGTCAC
GTATATACTAACATGGCAGGAAAAGAACATTGGATAAGTGCAAGAGGTTGTGTATATAACACAAATTACCATTTCGTATGGTCTACAAAATATAGAAGAA
AAATCCTTATTGGAAAAATAGCTGAAGATCTGAAAGAGCTTCACGAACAGATAGCAAAAGAAAAAGGTGTAACTCTTGTCACTCAAGAAGTAATGCCGGA
TCATGTGCATCTTTTCATTATCATGCATCCCAAGTTTGCACCTGCTGATATTGTGAAAATATTCAAAGGAATTACTGCAAAGAAACTCTTTGAAATGCAT
CCTGAAATAAAGAGCAGATTATGGAATGGTCATCTCTGGAATCCGTCTTATTATGTTGGAACATGTGGAGATACAACAAAAGAAACTGTAAAAATGTATA
TTGAAACTCAAAAGGTGAAATGAATGTTAAAAGTGCTTCGGTATAGAGTCTATCCTACAAAGGCTCAAAAAACAACTATGAATAATACTCTTGAGCTTTG
TAGGTGGACATATAACGAGACACTTGCACTCAGGAAAGATGCATGGGAGTCAGAGCAAAAGAATATAGGGTACTATGATTCTAAGAAAATGATCCCTGAA
TGGAAAAAAGAAAAACCTGAATTGAAAACAGTTCATTCACAGGTATTACAGGAAGTAATCAAGAGAGTAGATCTTGCCTTTCAAGCCTTTTTCCGTAGAG
TTAAAACAGGAGAGAAGGCAGGCTATCCTAGATTCAGAGGATACGGAAGGTATGATAGTTTTACCTATACTCAATCAGGCTTTTCTCTGGATTCTGATAG
GTTAACACTATCAAAAATAGGTGATATTAAAATCAAATTACATAGACCAGTAGAAGGTGAAATTAAAAGACTCAATGTTCGTAAGATGCCTACAGGAAAA
TGGTTTGTTTCTTTTCTGGTTGAAACTGATACTCCTTTGGAATTACAAAAAACAGGATTATCAGTAGGTGTAGACGTAGGTATCAAGAGCTTCTTAACGC
TTTCTGATGGTAATTATGTACCTAATCCTAGATTCTTTGTTACAGAAGAAAAGTTTCTGGCAAAAGTCCAAAGAAAACTCTCCAAACTTGAAAAAGGAAC
ACCTGAAAGAGCAAAAGCCTTGAAAGCTGTTCAACGTGTTCACGAAAGAATCTCAAACAAGAGAGAGGATTTTGTACAGAAAGTAAGTCTTAATCTGGTC
AGGAATTATGACCTGATTACTTTTGAAGATTTGAACATTAAAGGTATGATTAAAAACCACAAACTAGCAAAACACATAGCTGATGTTGCATGGAATAAGC
TTGTAACTATCACGTCTTACAAGGCAGAATGGGCTGGTAAACGTGTAGAGCTTGTCAATCCATGTAATACATCACAAATGTGCTCTGGATGCGGTGAAAT
AGTTAAAAAAGAACTATCAGAGAGAATACACAGTTGTCCTTACTGTGGTCTTACTCTTGATAGAGATCACAATGCCGCTATTAACATTATGAGATTGGGA
TTACAATCTCTCCAGAATTCTGGTAGATGCCCGTCACTTCAGTGATGGGAGTAGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
411 bp | 136 aa | 113 | 523 | + | No |
Chemistry : Y1
ORF sequence :
MAGKEHWISARGCVYNTNYHFVWSTKYRRKILIGKIAEDLKELHEQIAKEKGVTLVTQEVMPDHVHLFIIMHPKFAPADIVKIFKGITAKKLFEMHPEIK
SRLWNGHLWNPSYYVGTCGDTTKETVKMYIETQKVK
SRLWNGHLWNPSYYVGTCGDTTKETVKMYIETQKVK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 524 | 1645 | + | No |
AG : TnpB
ORF sequence :
MLKVLRYRVYPTKAQKTTMNNTLELCRWTYNETLALRKDAWESEQKNIGYYDSKKMIPEWKKEKPELKTVHSQVLQEVIKRVDLAFQAFFRRVKTGEKAG
YPRFRGYGRYDSFTYTQSGFSLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKWFVSFLVETDTPLELQKTGLSVGVDVGIKSFLTLSDGNYVP
NPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVHERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYK
AEWAGKRVELVNPCNTSQMCSGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGLQSLQNSGRCPSLQ
YPRFRGYGRYDSFTYTQSGFSLDSDRLTLSKIGDIKIKLHRPVEGEIKRLNVRKMPTGKWFVSFLVETDTPLELQKTGLSVGVDVGIKSFLTLSDGNYVP
NPRFFVTEEKFLAKVQRKLSKLEKGTPERAKALKAVQRVHERISNKREDFVQKVSLNLVRNYDLITFEDLNIKGMIKNHKLAKHIADVAWNKLVTITSYK
AEWAGKRVELVNPCNTSQMCSGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRLGLQSLQNSGRCPSLQ
Blast result :
Comments
ISMma22 is 67% (ORF A) aa similar to ISDra2 and 56% (ORF B) to ISMac7.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461