ISMma21
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 720 bp
Ends
Left end : TACTAAGGGAGCGCAGAGGGTCACGAATACCCCATCCTTTAGGGTGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCACTTTAAATATCTTAATCCTT II struct. : Yes
Right end : AGCAAAGAAAACTTGATGATTTCTAACTACCAAAACAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGGGTGGCCGCCCGCAATTTGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTTACCTGTAT | TTAT | TTTCCAGGGTCTTTTTTCTTT | TGAT |
TGGAAATATTT | TTAT | TTTTAGAATTCCACAATTTAT | tgat |
GTGTTCTTCAT | TAAT | TTTTGCTTTTGTCTCAAGCTT | tgat |
TTATTCTTATT | TTAT | TCTTTGTCTGATTTATCTTTT | TGAT |
DNA sequence
TACTAAGGGAGCGCAGAGGGTCACGAATACCCCATCCTTTAGGGTGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCACTTTAAATATCTTAATCCTT
GCTTTTTTTGTAAAATAAGCTTGTTTTTGGCACCATAGCCACCGATGGTGCCATCCATCTATGGCTAGGATGTGATATCAGTTGGAATTACACAGTTTTA
GCCATGGCTATGGTCAGATTACCTACCACATCGTGTTGGTGCCTAAGTATCGATACAGTATATTCTACAATAAGCGAATTAAAAAAGATTGCGAGTTAAT
TTTCAGTAACATTTGCACTAAAAATGGCTACAAAATACATGCAATGGAAGTAGTAGACAATCATGTTCACTTGTTTCTGGAATTCCATCCAAGTAATTCT
CTGTCAGAGGTAATTCAATATTTGAAAGGAGGCAGTTCTTACAGACTGTTCAAGCTCCATCCTGATCTTAAAAAACAGTATTGGGGTGGAAGTCTATGGT
CAAATGGAAAGTTCTATCGATCCGTTGGAAACGTAACTGCTGATACAATTAAGCATTACATTAAAGAATCGCAAGGAAAACCGAGTGAAGAGTCTCAATT
GTATAGATTCATGAGATCCGAGCAAAGAAAACTTGATGATTTCTAACTACCAAAACAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGG
GTGGCCGCCCGCAATTTGAT
GCTTTTTTTGTAAAATAAGCTTGTTTTTGGCACCATAGCCACCGATGGTGCCATCCATCTATGGCTAGGATGTGATATCAGTTGGAATTACACAGTTTTA
GCCATGGCTATGGTCAGATTACCTACCACATCGTGTTGGTGCCTAAGTATCGATACAGTATATTCTACAATAAGCGAATTAAAAAAGATTGCGAGTTAAT
TTTCAGTAACATTTGCACTAAAAATGGCTACAAAATACATGCAATGGAAGTAGTAGACAATCATGTTCACTTGTTTCTGGAATTCCATCCAAGTAATTCT
CTGTCAGAGGTAATTCAATATTTGAAAGGAGGCAGTTCTTACAGACTGTTCAAGCTCCATCCTGATCTTAAAAAACAGTATTGGGGTGGAAGTCTATGGT
CAAATGGAAAGTTCTATCGATCCGTTGGAAACGTAACTGCTGATACAATTAAGCATTACATTAAAGAATCGCAAGGAAAACCGAGTGAAGAGTCTCAATT
GTATAGATTCATGAGATCCGAGCAAAGAAAACTTGATGATTTCTAACTACCAAAACAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGG
GTGGCCGCCCGCAATTTGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
465 bp | 154 aa | 181 | 645 | + | No |
Chemistry : Y1
ORF sequence :
MELHSFSHGYGQITYHIVLVPKYRYSIFYNKRIKKDCELIFSNICTKNGYKIHAMEVVDNHVHLFLEFHPSNSLSEVIQYLKGGSSYRLFKLHPDLKKQY
WGGSLWSNGKFYRSVGNVTADTIKHYIKESQGKPSEESQLYRFMRSEQRKLDDF
WGGSLWSNGKFYRSVGNVTADTIKHYIKESQGKPSEESQLYRFMRSEQRKLDDF
Blast result :
Comments
ISMma21 is 59% aa similar to ISW1.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461