ISMbu11
- Family ISNCY
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii |
DNA section
IS Length : 1278 bp
Ends
IR Length : 18
IRL : GAGATTATCAAATTAGCTTTTCGCTTTAAAAACGTAACTCTTTTTTCAAG
IRR : GAGATTATCAAATTAGCTCATAAATCCTCCCATTCTAATTTGATGACATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAAAGCTCATCATA | AGTGT | AAAAAAATAATTCAGTC | 5 |
DNA sequence
GAGATTATCAAATTAGCTTTTCGCTTTAAAAACGTAACTCTTTTTTCAAGACTACTGGCACCACTCTGGGCATAGCTTATGCATTGCATTTATATAGCAG
AAAATGTACCAGCCCATGAAATATTATTACGATGTTTCGGACGGAATCTGTACCAGAGATTCAATTGCTAACTATCTGAACACAGATAATGCATCAATAT
GCCAATTTTTGTATTTCTTAGATATCGATGACATTGCTTCTTATGTTGAAAGTAGCTATTATGCCGATAAGGACTGGCACTTTCGGTATAAGGTTTCGTC
AATGATAAAGCTCATCGTTGTGAAATGTTATAGAAACCTCTCATTTGAGAAAACAATATCGACCTTAACAAAAGAAGAAGCGCAGCTTCTTTCTTTTGAA
GACAATAACGGCATTATGAATCTTCCATCCCCTGCAACACTGCATCATTTTGTAAAATACAGACTTGGAAAAACTGGACTCGATGAAGTAATGTTCAAAA
TTGGAAAGAATATCTCCAAAAATACAAAGATTAGAGATGCGAAAACAGATTCAACTCCACTTGAAGCATCAAGATATGACAAGTATGCAGATTACAATCC
GCATTATAATTGTAAGATGGACAAAGCTCACATCACCATGATTGGAACACTTCCAATCTACATGACTCATACAAAAGGTGCTTCTCACGATTCTCCTGAA
TTGAAGAAACATATTGATGCATTGGTAGAAATGGGAGTTGACATTGACACTTATGCATTGGATGGAGGTTATGATTCATTCAGGAATCATGCAGATATCT
GGTATAAGTTGAATGCAAAACCAGTGATTGCATACTCTTCGGATTCTAAAGTTCAATACGAGGGAATGATGGAAAGAATTGATCACTGGGTTAACAAAAT
GTGGAAACTTGGTGGATCTATTCATATGAAATATGAAGAAAAACTTCATTTCCTCTATGAAAATGGAAGAGAAAAACAGGTAGGTATGCACTTGCGAAAC
AAGAATATCAAAGATGATGGATTCGATGAAGATTATTCGCACAGGGGTGAATGTGAACGAGTACACAATCATATTAAGTTGACTGTAAAGTTCGACATCA
GAGGAATGAAAAATGGCAGTAAGAAACTGTATTCAGTTATGAATTTCGTTGCATATCAATTGCTTGTAGCTACAAATTTGCAAAATGGAGTTAAAGAAAC
TAACTCATTTGCAAATTATGTATGAGGTAATGTCATCAAATTAGAATGGGAGGATTTATGAGCTAATTTGATAATCTC
AAAATGTACCAGCCCATGAAATATTATTACGATGTTTCGGACGGAATCTGTACCAGAGATTCAATTGCTAACTATCTGAACACAGATAATGCATCAATAT
GCCAATTTTTGTATTTCTTAGATATCGATGACATTGCTTCTTATGTTGAAAGTAGCTATTATGCCGATAAGGACTGGCACTTTCGGTATAAGGTTTCGTC
AATGATAAAGCTCATCGTTGTGAAATGTTATAGAAACCTCTCATTTGAGAAAACAATATCGACCTTAACAAAAGAAGAAGCGCAGCTTCTTTCTTTTGAA
GACAATAACGGCATTATGAATCTTCCATCCCCTGCAACACTGCATCATTTTGTAAAATACAGACTTGGAAAAACTGGACTCGATGAAGTAATGTTCAAAA
TTGGAAAGAATATCTCCAAAAATACAAAGATTAGAGATGCGAAAACAGATTCAACTCCACTTGAAGCATCAAGATATGACAAGTATGCAGATTACAATCC
GCATTATAATTGTAAGATGGACAAAGCTCACATCACCATGATTGGAACACTTCCAATCTACATGACTCATACAAAAGGTGCTTCTCACGATTCTCCTGAA
TTGAAGAAACATATTGATGCATTGGTAGAAATGGGAGTTGACATTGACACTTATGCATTGGATGGAGGTTATGATTCATTCAGGAATCATGCAGATATCT
GGTATAAGTTGAATGCAAAACCAGTGATTGCATACTCTTCGGATTCTAAAGTTCAATACGAGGGAATGATGGAAAGAATTGATCACTGGGTTAACAAAAT
GTGGAAACTTGGTGGATCTATTCATATGAAATATGAAGAAAAACTTCATTTCCTCTATGAAAATGGAAGAGAAAAACAGGTAGGTATGCACTTGCGAAAC
AAGAATATCAAAGATGATGGATTCGATGAAGATTATTCGCACAGGGGTGAATGTGAACGAGTACACAATCATATTAAGTTGACTGTAAAGTTCGACATCA
GAGGAATGAAAAATGGCAGTAAGAAACTGTATTCAGTTATGAATTTCGTTGCATATCAATTGCTTGTAGCTACAAATTTGCAAAATGGAGTTAAAGAAAC
TAACTCATTTGCAAATTATGTATGAGGTAATGTCATCAAATTAGAATGGGAGGATTTATGAGCTAATTTGATAATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1122 bp | 373 aa | 104 | 1225 | + | No |
Chemistry : Unknow
ORF sequence :
MYQPMKYYYDVSDGICTRDSIANYLNTDNASICQFLYFLDIDDIASYVESSYYADKDWHFRYKVSSMIKLIVVKCYRNLSFEKTISTLTKEEAQLLSFED
NNGIMNLPSPATLHHFVKYRLGKTGLDEVMFKIGKNISKNTKIRDAKTDSTPLEASRYDKYADYNPHYNCKMDKAHITMIGTLPIYMTHTKGASHDSPEL
KKHIDALVEMGVDIDTYALDGGYDSFRNHADIWYKLNAKPVIAYSSDSKVQYEGMMERIDHWVNKMWKLGGSIHMKYEEKLHFLYENGREKQVGMHLRNK
NIKDDGFDEDYSHRGECERVHNHIKLTVKFDIRGMKNGSKKLYSVMNFVAYQLLVATNLQNGVKETNSFANYV
NNGIMNLPSPATLHHFVKYRLGKTGLDEVMFKIGKNISKNTKIRDAKTDSTPLEASRYDKYADYNPHYNCKMDKAHITMIGTLPIYMTHTKGASHDSPEL
KKHIDALVEMGVDIDTYALDGGYDSFRNHADIWYKLNAKPVIAYSSDSKVQYEGMMERIDHWVNKMWKLGGSIHMKYEEKLHFLYENGREKQVGMHLRNK
NIKDDGFDEDYSHRGECERVHNHIKLTVKFDIRGMKNGSKKLYSVMNFVAYQLLVATNLQNGVKETNSFANYV
Blast result :
Comments
ISMbu11 is 41% aa similar to IS4Sa.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank