ISMbu10
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii |
DNA section
IS Length : 789 bp
Ends
IR Length : 16/17
IRL : GGCTCTGTAGAAATCGTTATTATAACTTCAACTAAGCCATTCATTTTTAT
IRR : GGCTCTGTAGAAATCCTCATCCAAACTAAAAACACAGTCTTGATGAACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTGTAGAAATCGTTATTATAACTTCAACTAAGCCATTCATTTTTATAATAATAAATCCCCTGTGATTGATCTCCAACTTAAATACAAGGGGATGAA
TGTGTTTGTTCCAAATTATAAATCTGAAACACACTTCAAAAATTTGTTACTCGTACATATTCTGTTGTTTTGGATTCGATCTTTAAAAGAACACTGGACC
TATTTTACAAAAACAGAGACTCTATAGACATTACTGCAATTGATTCCACTGGATTTACAAGTGGTTATTGTAGTAATTATTATTCTTGGAGAATCAAAAA
ATGGAGACGAAGTTACGTTAAAACTAGTATTTCGGTTGATGTTCATAAATTTGTAATCACTGGTTACAAGATTTCTGGAAAACCAGTTCATGATGCAAAA
CATGCAAAGGCATTGCTATCGCAATGTCATCACAATAGGAGATCAAGATATTATGTGGTGGATAAAGCCTATGATTCTGAAAACATACACGAGTTGACGA
GGGAAAAACTTGGATCAATAGCAATTGTTCCATTGAGACAACGTGAAAGAAAGCGAATCAAGGGAAGATATCGGAAGAAGATGATACATGAATTTGATAG
CAAGATATACTCTATGCGGAATTTAAGTGAAACGATGTTCTCGGTTTTGAAAAGAAGGTATGGGGATAACTTACGTGCGAGAAAGTACAGAAATCAAGTA
AAAGAAGTGAAGTTCAAAGTGATATTACACAATCTTGATAAGTTCATCAAGACTGTGTTTTTAGTTTGGATGAGGATTTCTACAGAGCC
TGTGTTTGTTCCAAATTATAAATCTGAAACACACTTCAAAAATTTGTTACTCGTACATATTCTGTTGTTTTGGATTCGATCTTTAAAAGAACACTGGACC
TATTTTACAAAAACAGAGACTCTATAGACATTACTGCAATTGATTCCACTGGATTTACAAGTGGTTATTGTAGTAATTATTATTCTTGGAGAATCAAAAA
ATGGAGACGAAGTTACGTTAAAACTAGTATTTCGGTTGATGTTCATAAATTTGTAATCACTGGTTACAAGATTTCTGGAAAACCAGTTCATGATGCAAAA
CATGCAAAGGCATTGCTATCGCAATGTCATCACAATAGGAGATCAAGATATTATGTGGTGGATAAAGCCTATGATTCTGAAAACATACACGAGTTGACGA
GGGAAAAACTTGGATCAATAGCAATTGTTCCATTGAGACAACGTGAAAGAAAGCGAATCAAGGGAAGATATCGGAAGAAGATGATACATGAATTTGATAG
CAAGATATACTCTATGCGGAATTTAAGTGAAACGATGTTCTCGGTTTTGAAAAGAAGGTATGGGGATAACTTACGTGCGAGAAAGTACAGAAATCAAGTA
AAAGAAGTGAAGTTCAAAGTGATATTACACAATCTTGATAAGTTCATCAAGACTGTGTTTTTAGTTTGGATGAGGATTTCTACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
780 bp | 259 aa | 170 | 949 | + | No |
Chemistry : DDE
ORF sequence :
MDSIFKRTLDLFYKNRDSIDITAIDSTGFTSGYCSNYYSWRIKKWRRSYVKTSISVDVHKFVITGYKISGKPVHDAKHAKALLSQCHHNRRSRYYVVDKA
YDSENIHELTREKLGSIAIVPLRQRERKRIKGRYRKKMIHEFDSKIYSMRNLSETMFSVLKRRYGDNLRARKYRNQVKEVKFKVILHNLDKFIKTVFLVW
MRISTEPFFLMFLCQSSFSSFNLKTSIPAPRHAVILLLSISAQTMPRRISSTSTPYFSA
YDSENIHELTREKLGSIAIVPLRQRERKRIKGRYRKKMIHEFDSKIYSMRNLSETMFSVLKRRYGDNLRARKYRNQVKEVKFKVILHNLDKFIKTVFLVW
MRISTEPFFLMFLCQSSFSSFNLKTSIPAPRHAVILLLSISAQTMPRRISSTSTPYFSA
Blast result :
Comments
ISMbu10 is 47% aa similar to ISC1058.
There are no STOP codon, the transposase use the first stop codon after the end of the IRR.
There are no STOP codon, the transposase use the first stop codon after the end of the IRR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank