ISMbu9
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii DSM 6242 |
DNA section
IS Length : 1281 bp
Ends
oriIS : TTGTATATAATCTATAACTTTTCGTACCTATAAGCAATATTTATATTATGGTCTAAGCCAATTCATTTCATATTGCAAACTACTACTTATGCATCCAATC II struct. : No
terIS : TGGGGAAATTGCGGAAGTTAATGGCAATATAAATGATCGGGGTATAGTGATGGGGTAGTCGTACCTACAATAAATTTGCACCCGAAGGGTGCTTTCTTGT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|
DNA sequence
TTGTATATAATCTATAACTTTTCGTACCTATAAGCAATATTTATATTATGGTCTAAGCCAATTCATTTCATATTGCAAACTACTACTTATGCATCCAATC
AGCTTCTTACTGTCAAACGTATCTTCAAAGACAATAATAACTGGGATCAATTTTGCATTGACCATGAAGACATTCTTCGCAATGTTGAGATTGAAGAAGT
CAACAAGATGTTATCTTGTAAAGATAAGAGTCGTGGTTTCTTCACTTATCAATGTGAAAGTTGTGGTAATTACAAAACGGTCTATTTTGGATGTAACAGT
TGTATCTGCACAAATTGTGGTCTAAATCATACTGAAAAATGGTCTAAATCTCTCAAACGTGCAATGTTCAATGTAGTTCATAGGCATGCTGTTCTTACAA
TCCCGGATCTTCTGTGGGGTTTTGTTAGAAAGAATCGTTTTCTACTAAAGGTTTTGATGGATGCAGCAATTGTAGCAATTAATGACACTATTTCATTCAA
GCACAGGAATGATCGTTTGCTTGCGGGTGCTATTGTCGTTCTACATCCATTTTCCAAAGATATGGGTTTTAATCCTCATCTTCATATTCTTCTAACTGAA
GGTAGATTTGATATGTATGGTAAATTCATTCACCAAAAGTTCATTCATTTTAAGACCATGCGAAAAACATGGCAATACCAAGTGCTTACGAGATTCAAAG
ATGCCCTCTCTAAGGTTCAAGCATTCTCCCATCTTGTAAATCAACTTTTTAAAGAATATCCTGATGGATTTTATGTTCATATGCCAAAAAACTCAAGAAT
CACTAACAAACAAAGGATGGCGCAGTATGTCGGCAGGTATATCAGGCATCCAGCTATCGCAAATTCAAGGTTGTATAGTTATGATGGAAAATCCGTTACT
TTTTGGTATAATGATCATGAAGGAGTAAGGCATTTTGTGACAATGGAATTGCAGGAATTTATTAGAGCGTTAATTCAGCATATTCCTGATCGAAATTTTA
AAATGATACGGTATTATGGTGCATATAGTCGCAAAGTCAAAAAGAGATATTCAAAGTGCTTACAGAGAAGTATAAAGCAGACAAATCTCAAAGACTTCAA
AAAAGTGTTGAATAAGTGGGCGCCACAGTGTTCATTTTGTGGTGGCAAAATGAAGTTTGTTTGGTATGAGAAAAGACCACCTGGGGAAATTGCGGAAGTT
AATGGCAATATAAATGATCGGGGTATAGTGATGGGGTAGTCGTACCTACAATAAATTTGCACCCGAAGGGTGCTTTCTTGT
AGCTTCTTACTGTCAAACGTATCTTCAAAGACAATAATAACTGGGATCAATTTTGCATTGACCATGAAGACATTCTTCGCAATGTTGAGATTGAAGAAGT
CAACAAGATGTTATCTTGTAAAGATAAGAGTCGTGGTTTCTTCACTTATCAATGTGAAAGTTGTGGTAATTACAAAACGGTCTATTTTGGATGTAACAGT
TGTATCTGCACAAATTGTGGTCTAAATCATACTGAAAAATGGTCTAAATCTCTCAAACGTGCAATGTTCAATGTAGTTCATAGGCATGCTGTTCTTACAA
TCCCGGATCTTCTGTGGGGTTTTGTTAGAAAGAATCGTTTTCTACTAAAGGTTTTGATGGATGCAGCAATTGTAGCAATTAATGACACTATTTCATTCAA
GCACAGGAATGATCGTTTGCTTGCGGGTGCTATTGTCGTTCTACATCCATTTTCCAAAGATATGGGTTTTAATCCTCATCTTCATATTCTTCTAACTGAA
GGTAGATTTGATATGTATGGTAAATTCATTCACCAAAAGTTCATTCATTTTAAGACCATGCGAAAAACATGGCAATACCAAGTGCTTACGAGATTCAAAG
ATGCCCTCTCTAAGGTTCAAGCATTCTCCCATCTTGTAAATCAACTTTTTAAAGAATATCCTGATGGATTTTATGTTCATATGCCAAAAAACTCAAGAAT
CACTAACAAACAAAGGATGGCGCAGTATGTCGGCAGGTATATCAGGCATCCAGCTATCGCAAATTCAAGGTTGTATAGTTATGATGGAAAATCCGTTACT
TTTTGGTATAATGATCATGAAGGAGTAAGGCATTTTGTGACAATGGAATTGCAGGAATTTATTAGAGCGTTAATTCAGCATATTCCTGATCGAAATTTTA
AAATGATACGGTATTATGGTGCATATAGTCGCAAAGTCAAAAAGAGATATTCAAAGTGCTTACAGAGAAGTATAAAGCAGACAAATCTCAAAGACTTCAA
AAAAGTGTTGAATAAGTGGGCGCCACAGTGTTCATTTTGTGGTGGCAAAATGAAGTTTGTTTGGTATGAGAAAAGACCACCTGGGGAAATTGCGGAAGTT
AATGGCAATATAAATGATCGGGGTATAGTGATGGGGTAGTCGTACCTACAATAAATTTGCACCCGAAGGGTGCTTTCTTGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 73 | 1239 | + | No |
Chemistry : Y2
ORF sequence :
MQTTTYASNQLLTVKRIFKDNNNWDQFCIDHEDILRNVEIEEVNKMLSCKDKSRGFFTYQCESCGNYKTVYFGCNSCICTNCGLNHTEKWSKSLKRAMFN
VVHRHAVLTIPDLLWGFVRKNRFLLKVLMDAAIVAINDTISFKHRNDRLLAGAIVVLHPFSKDMGFNPHLHILLTEGRFDMYGKFIHQKFIHFKTMRKTW
QYQVLTRFKDALSKVQAFSHLVNQLFKEYPDGFYVHMPKNSRITNKQRMAQYVGRYIRHPAIANSRLYSYDGKSVTFWYNDHEGVRHFVTMELQEFIRAL
IQHIPDRNFKMIRYYGAYSRKVKKRYSKCLQRSIKQTNLKDFKKVLNKWAPQCSFCGGKMKFVWYEKRPPGEIAEVNGNINDRGIVMG
VVHRHAVLTIPDLLWGFVRKNRFLLKVLMDAAIVAINDTISFKHRNDRLLAGAIVVLHPFSKDMGFNPHLHILLTEGRFDMYGKFIHQKFIHFKTMRKTW
QYQVLTRFKDALSKVQAFSHLVNQLFKEYPDGFYVHMPKNSRITNKQRMAQYVGRYIRHPAIANSRLYSYDGKSVTFWYNDHEGVRHFVTMELQEFIRAL
IQHIPDRNFKMIRYYGAYSRKVKKRYSKCLQRSIKQTNLKDFKKVLNKWAPQCSFCGGKMKFVWYEKRPPGEIAEVNGNINDRGIVMG
Blast result :
Comments
ISmbu9 is 49% aa similar to IS1294.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission Genbank.
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission Genbank.