ISMbu8
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii |
DNA section
IS Length : 1247 bp
Ends
IR Length : 13/17
IRL : CAGTAGTTCTCTAATTTTTGCTTAACCCCATAAATCCACATCAAACGGCA
IRR : CAGTACTTCACTAATATATTCTCCGTCATATAATATCTCCACATTCACCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTATAACTTATTCT | AA/TATT | ATCAGCATCTCCCTTCCT | 7 |
DNA sequence
CAGTAGTTCTCTAATTTTTGCTTAACCCCATAAATCCACATCAAACGGCACATTTATATACGGTTAAAAATTCCCCTCCATGTTACGTCGACTAGAACTA
ACTCCAACCCACTCATCAAAACTGTTTTACAGCCTCTTCTCGACAATATACATATTCCAATCAATGGTTCTCTCAATTGCAAAGATCTATTTGCCAGTGT
TCTTGGCATGGCAACATGGAATCGTTCAATTCATTCAATTCATAAACAGTATCATAAGATTCCTTGTGAAACATCAATGAGATTCCATTTACAAAAAACC
GAGTTGGATCAACTCATTGAACACAATACAAAAATACTCTTACAATCATCACTTGAAACTCTCAAACAAAAGAAAAAGCACGACTTTGCTATTGATTATA
CGAATGATCAATACTATGGAAGCATAGATGATAGCAATAATAGATATGTGATTAGAGGTCAAGCCAAAAAATCAACGAACTCATTCTATTCTTACATCTC
GCTTTGCATTATTGACAAAGATGAAAGGGTAACAATTTCTGTGCTTCCTGTGGAAAAAGGAAACTCTAAGACAGATTATCTCAAATATTTTATAGACCAA
ATCAAACAGATTAAACTCAAGATCAATGTTCTTTGTTTGAATAGGGAATTCTATTCAAGAGATGTTTTTTCTTTTTTACAGGAAAATGAAGTTGCACATA
TTGTTCCTGTTGTTAAAATGGGAAAAAGGTTAAAAGAAATTATTGATGGAACTAAAAAGCGTTGTGACACATATACGATGAATAGCACAAAAGGAAAAGT
GGAGCTTGTCCTTGCTATTGATGTCAAATACAGGAAAGGGAAGCGAGGAAAGAATGGATGTGAGAACCTTGGATTTGTTGTTTATGGGATTGATTGGGAT
CCAAGAAAAGTCAGTGACACTTACAGGAAAAAGTTTGCTATAGAATCGTCTTATAGGATGCGAAATGTGGTAAATCATAAAACGTGTTCTAAAGACTCTA
TGTTAAGATATTTTTATGCGCTGATATCGTTTCTTTTCAAAAATGCATGGGTGTCAATACAGAGAATGCATTTCATAAAAGTGAAAAGAGGACCAAAGAC
GATTGAATCTGATATGTTTAGGTTTGATATGTTTGTTCATTTAATTGTGGAATGGGTGAGAAGAAAGTTGAAAGTTAGGTTAATTGTTAAGTGTTTTAGG
TGAATGTGGAGATATTATATGACGGAGAATATATTAGTGAAGTACTG
ACTCCAACCCACTCATCAAAACTGTTTTACAGCCTCTTCTCGACAATATACATATTCCAATCAATGGTTCTCTCAATTGCAAAGATCTATTTGCCAGTGT
TCTTGGCATGGCAACATGGAATCGTTCAATTCATTCAATTCATAAACAGTATCATAAGATTCCTTGTGAAACATCAATGAGATTCCATTTACAAAAAACC
GAGTTGGATCAACTCATTGAACACAATACAAAAATACTCTTACAATCATCACTTGAAACTCTCAAACAAAAGAAAAAGCACGACTTTGCTATTGATTATA
CGAATGATCAATACTATGGAAGCATAGATGATAGCAATAATAGATATGTGATTAGAGGTCAAGCCAAAAAATCAACGAACTCATTCTATTCTTACATCTC
GCTTTGCATTATTGACAAAGATGAAAGGGTAACAATTTCTGTGCTTCCTGTGGAAAAAGGAAACTCTAAGACAGATTATCTCAAATATTTTATAGACCAA
ATCAAACAGATTAAACTCAAGATCAATGTTCTTTGTTTGAATAGGGAATTCTATTCAAGAGATGTTTTTTCTTTTTTACAGGAAAATGAAGTTGCACATA
TTGTTCCTGTTGTTAAAATGGGAAAAAGGTTAAAAGAAATTATTGATGGAACTAAAAAGCGTTGTGACACATATACGATGAATAGCACAAAAGGAAAAGT
GGAGCTTGTCCTTGCTATTGATGTCAAATACAGGAAAGGGAAGCGAGGAAAGAATGGATGTGAGAACCTTGGATTTGTTGTTTATGGGATTGATTGGGAT
CCAAGAAAAGTCAGTGACACTTACAGGAAAAAGTTTGCTATAGAATCGTCTTATAGGATGCGAAATGTGGTAAATCATAAAACGTGTTCTAAAGACTCTA
TGTTAAGATATTTTTATGCGCTGATATCGTTTCTTTTCAAAAATGCATGGGTGTCAATACAGAGAATGCATTTCATAAAAGTGAAAAGAGGACCAAAGAC
GATTGAATCTGATATGTTTAGGTTTGATATGTTTGTTCATTTAATTGTGGAATGGGTGAGAAGAAAGTTGAAAGTTAGGTTAATTGTTAAGTGTTTTAGG
TGAATGTGGAGATATTATATGACGGAGAATATATTAGTGAAGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
996 bp | 331 aa | 208 | 1203 | + | No |
Chemistry : DDE
ORF sequence :
MATWNRSIHSIHKQYHKIPCETSMRFHLQKTELDQLIEHNTKILLQSSLETLKQKKKHDFAIDYTNDQYYGSIDDSNNRYVIRGQAKKSTNSFYSYISLC
IIDKDERVTISVLPVEKGNSKTDYLKYFIDQIKQIKLKINVLCLNREFYSRDVFSFLQENEVAHIVPVVKMGKRLKEIIDGTKKRCDTYTMNSTKGKVEL
VLAIDVKYRKGKRGKNGCENLGFVVYGIDWDPRKVSDTYRKKFAIESSYRMRNVVNHKTCSKDSMLRYFYALISFLFKNAWVSIQRMHFIKVKRGPKTIE
SDMFRFDMFVHLIVEWVRRKLKVRLIVKCFR
IIDKDERVTISVLPVEKGNSKTDYLKYFIDQIKQIKLKINVLCLNREFYSRDVFSFLQENEVAHIVPVVKMGKRLKEIIDGTKKRCDTYTMNSTKGKVEL
VLAIDVKYRKGKRGKNGCENLGFVVYGIDWDPRKVSDTYRKKFAIESSYRMRNVVNHKTCSKDSMLRYFYALISFLFKNAWVSIQRMHFIKVKRGPKTIE
SDMFRFDMFVHLIVEWVRRKLKVRLIVKCFR
Blast result :
Comments
ISMbu8 is 84% aa similar to ISMBu7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank.
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank.