ISMbu7
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii |
DNA section
IS Length : 1248 bp
Ends
IR Length : 13/17
IRL : CAGTAGTTCTCTAATTTCTGCATAATCCATTAAATCAACACCATTCGGCA
IRR : CAGTACTTCACTAATATTCCCTCCACTAAATAAATTATATAATCTCACCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTCATAATTTTAAC | AAATT | AGCTCATAAATTCTCCC | 5 |
DNA sequence
CAGTAGTTCTCTAATTTCTGCATAATCCATTAAATCAACACCATTCGGCACATTTATATACCTTTAAAATGCCCCCTCCATGTTATCACGACTAGAATTA
ACACCTGCTCACTGTATCAAAACTGTTCTACCACCACTTCTGGACAACATTCCCATTTCAATAAATGGATCACTTACTCCTAAAGACCTCTTCACTAATA
TTCTCGGAATGTCCACCGATAAACTTTCAATTCATTCGATTGGTAAACAATATCATAATACTCCATGTGAAACATCAATGAGATATCATTTACATAAGAT
TGATTTCGATCAGCTCATTGAAAACAATGCAAAGATTCTCTTGCAATCATCCCACAAAACCCTTGATTCAAATAAAAAGTATGATCTTGCCATCGATTAT
ACAAATGATCCATACTATGGAGAAGTGAATTATGTCAATGAAAACTATGTGATTCGAGGACAAGCTAAGAAATCAACAAACTCATTCTACTCTTATATTT
CTCTTTGCATTATAAACAAATACACAAGATTTACAATTTCCATGTTACCTGTGGAAAAAGGCAAAACGAAGACAGATTATCTGAAATATTTCATAGACGT
AGTTGATAAAATCAATCTCAAAATAAATATTCTTTGTTTGGACAGAGAATTTTATTCCAGAGATGTTTTTACATTTTTGCAGGAGAATGACATTCCACAT
ATCACTCCTGTTGTAAGAAAGGGAAAGAGAATAAAAGATATTCTTGATGGAAATAATAAACGCTATGAAAAGTACGTCATGAAGAATAAGAAAGGAGATG
TGGGACTTGATATTGCTATTGATGTTAAGTATCTGAAAGGAAAGAGAGGGAAGAATGGTTGTGAGAATCTAGGGTTTGTTGTTTATGGAATTGATTGGGA
ACCCGGAAAGATTAGTACGATCTACAGGAAACGGTTTACGATCGAATCATCATATCGAATGCGGAATGTGGTGAAACCAAAAACATCCTCAAGAGATCCA
ATGCTACGATATTTCTATGCGTTGATATCATTTATGTTAAAAAATGCATGGGTATCAATCCAGAGAATGCATTTTATGAAAGTGAAAAGGGGACCGAAAA
CAATAGAGGAAGATGTTTTTAGATTTGATTTATTTGTTCACTTTGTTGAGGAATGGGTGAAAAAAAGGTTGAAAGTGAAGTTAGTAGTGAAATGTTATAG
GTGAGATTATATAATTTATTTAGTGGAGGGAATATTAGTGAAGTACTG
ACACCTGCTCACTGTATCAAAACTGTTCTACCACCACTTCTGGACAACATTCCCATTTCAATAAATGGATCACTTACTCCTAAAGACCTCTTCACTAATA
TTCTCGGAATGTCCACCGATAAACTTTCAATTCATTCGATTGGTAAACAATATCATAATACTCCATGTGAAACATCAATGAGATATCATTTACATAAGAT
TGATTTCGATCAGCTCATTGAAAACAATGCAAAGATTCTCTTGCAATCATCCCACAAAACCCTTGATTCAAATAAAAAGTATGATCTTGCCATCGATTAT
ACAAATGATCCATACTATGGAGAAGTGAATTATGTCAATGAAAACTATGTGATTCGAGGACAAGCTAAGAAATCAACAAACTCATTCTACTCTTATATTT
CTCTTTGCATTATAAACAAATACACAAGATTTACAATTTCCATGTTACCTGTGGAAAAAGGCAAAACGAAGACAGATTATCTGAAATATTTCATAGACGT
AGTTGATAAAATCAATCTCAAAATAAATATTCTTTGTTTGGACAGAGAATTTTATTCCAGAGATGTTTTTACATTTTTGCAGGAGAATGACATTCCACAT
ATCACTCCTGTTGTAAGAAAGGGAAAGAGAATAAAAGATATTCTTGATGGAAATAATAAACGCTATGAAAAGTACGTCATGAAGAATAAGAAAGGAGATG
TGGGACTTGATATTGCTATTGATGTTAAGTATCTGAAAGGAAAGAGAGGGAAGAATGGTTGTGAGAATCTAGGGTTTGTTGTTTATGGAATTGATTGGGA
ACCCGGAAAGATTAGTACGATCTACAGGAAACGGTTTACGATCGAATCATCATATCGAATGCGGAATGTGGTGAAACCAAAAACATCCTCAAGAGATCCA
ATGCTACGATATTTCTATGCGTTGATATCATTTATGTTAAAAAATGCATGGGTATCAATCCAGAGAATGCATTTTATGAAAGTGAAAAGGGGACCGAAAA
CAATAGAGGAAGATGTTTTTAGATTTGATTTATTTGTTCACTTTGTTGAGGAATGGGTGAAAAAAAGGTTGAAAGTGAAGTTAGTAGTGAAATGTTATAG
GTGAGATTATATAATTTATTTAGTGGAGGGAATATTAGTGAAGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1125 bp | 374 aa | 80 | 1204 | + | No |
Chemistry : DDE
ORF sequence :
MLSRLELTPAHCIKTVLPPLLDNIPISINGSLTPKDLFTNILGMSTDKLSIHSIGKQYHNTPCETSMRYHLHKIDFDQLIENNAKILLQSSHKTLDSNKK
YDLAIDYTNDPYYGEVNYVNENYVIRGQAKKSTNSFYSYISLCIINKYTRFTISMLPVEKGKTKTDYLKYFIDVVDKINLKINILCLDREFYSRDVFTFL
QENDIPHITPVVRKGKRIKDILDGNNKRYEKYVMKNKKGDVGLDIAIDVKYLKGKRGKNGCENLGFVVYGIDWEPGKISTIYRKRFTIESSYRMRNVVKP
KTSSRDPMLRYFYALISFMLKNAWVSIQRMHFMKVKRGPKTIEEDVFRFDLFVHFVEEWVKKRLKVKLVVKCYR
YDLAIDYTNDPYYGEVNYVNENYVIRGQAKKSTNSFYSYISLCIINKYTRFTISMLPVEKGKTKTDYLKYFIDVVDKINLKINILCLDREFYSRDVFTFL
QENDIPHITPVVRKGKRIKDILDGNNKRYEKYVMKNKKGDVGLDIAIDVKYLKGKRGKNGCENLGFVVYGIDWEPGKISTIYRKRFTIESSYRMRNVVKP
KTSSRDPMLRYFYALISFMLKNAWVSIQRMHFMKVKRGPKTIEEDVFRFDLFVHFVEEWVKKRLKVKLVVKCYR
Blast result :
Comments
ISMbu7 is 48% aa similar to ISH3B.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank.
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank.