ISMhu9
- Family IS701
- Group ISAba11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1080 bp
Ends
IR Length : 12
IRL : GGAGTTACGCAGTTAACTTTTATTATAGAAAGATCTATATATATTGACAA
IRR : GGAGTTACGCAGAACAACCTCTAAAAAATTTATAGCGCATATTTTGGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAAAAATAA | TATA | ATATAAAAAT | 4 |
DNA sequence
GGAGTTACGCAGTTAACTTTTATTATAGAAAGATCTATATATATTGACAACACCTATAATATACGTGCCTATAACGAAGCAGCCTTCAGATGTAGATTAT
GTCAATTACCTCATCGCAGCTCGATGCGACGTTTCTTGTATAAAAGTCGCTGATTGTTATTCGACGTCTGAATTCTCGATATCACATTATACCTTCAATC
GATTCCTAACAAGACAGTCTCTAACTCCTGAGACGTTGTGGGCTGAAGTTGAGGCATATGTTGACAGAAAAAGGGGCTGGTTGGTTCTGGATGACACTAT
TCTAGATAAAAAACATTCCAAAAAAATCGAATGTACATATTACCAGTGGAGTGGAAAAGAGCACAAAGTAATCAAAGGAATAGGATTGATTACCTTAATT
TGGACAGATGGAATCACTTCATTTCCAATTGATTATCGAATTTATGATAAGGATGTTGATGATAAGACCAAAAATGATCATCTCCAAGAAATGGCCTTGA
CAGCTTTCAAGAGAGGATTTACTCCTGCCTTTGTCTTGTTTGATAGTTGGTATTCCGGAAATGAAAATTTGAAGTTGATTAACCGTCTTGGATGGTTTTA
TTTCACACGAGTTAAGAAAAATCGTATGGTCAATCCCGATGCCCAAGGTATTGTTCAAGTGTCATCATTAAATATACCAGAGGAGGGATTAGAAGTCCAT
TTAAAGAAATATGGATTTATTCGTCTTTTTCACTCACTAAATCGTAAAGGTGTAAGTAGATATTGGGCAACCAATTTTTTGCCGATGAATAATGAAGATA
GGCTGGTTTTACGATCTATTTGCTGGACAATCGAGAATTATCATAGGGCAATCAAAGAACTATGTGGTGTCGAAAAATGCCAAGCTAGAAAGGGAATTAT
CCAACGAAATCATATTAATTGCTCACTTCGGGCATATTTACAATTCGAAGTCAATAAATTTTTGAATGGTGTTACTCCGTACGATGCTCAATGGCAAATC
ATAAAAGTTGGAATTTCAGAATATATTCAGAACCCAAAATATGCGCTATAAATTTTTTAGAGGTTGTTCTGCGTAACTCC
GTCAATTACCTCATCGCAGCTCGATGCGACGTTTCTTGTATAAAAGTCGCTGATTGTTATTCGACGTCTGAATTCTCGATATCACATTATACCTTCAATC
GATTCCTAACAAGACAGTCTCTAACTCCTGAGACGTTGTGGGCTGAAGTTGAGGCATATGTTGACAGAAAAAGGGGCTGGTTGGTTCTGGATGACACTAT
TCTAGATAAAAAACATTCCAAAAAAATCGAATGTACATATTACCAGTGGAGTGGAAAAGAGCACAAAGTAATCAAAGGAATAGGATTGATTACCTTAATT
TGGACAGATGGAATCACTTCATTTCCAATTGATTATCGAATTTATGATAAGGATGTTGATGATAAGACCAAAAATGATCATCTCCAAGAAATGGCCTTGA
CAGCTTTCAAGAGAGGATTTACTCCTGCCTTTGTCTTGTTTGATAGTTGGTATTCCGGAAATGAAAATTTGAAGTTGATTAACCGTCTTGGATGGTTTTA
TTTCACACGAGTTAAGAAAAATCGTATGGTCAATCCCGATGCCCAAGGTATTGTTCAAGTGTCATCATTAAATATACCAGAGGAGGGATTAGAAGTCCAT
TTAAAGAAATATGGATTTATTCGTCTTTTTCACTCACTAAATCGTAAAGGTGTAAGTAGATATTGGGCAACCAATTTTTTGCCGATGAATAATGAAGATA
GGCTGGTTTTACGATCTATTTGCTGGACAATCGAGAATTATCATAGGGCAATCAAAGAACTATGTGGTGTCGAAAAATGCCAAGCTAGAAAGGGAATTAT
CCAACGAAATCATATTAATTGCTCACTTCGGGCATATTTACAATTCGAAGTCAATAAATTTTTGAATGGTGTTACTCCGTACGATGCTCAATGGCAAATC
ATAAAAGTTGGAATTTCAGAATATATTCAGAACCCAAAATATGCGCTATAAATTTTTTAGAGGTTGTTCTGCGTAACTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 65 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MPITKQPSDVDYVNYLIAARCDVSCIKVADCYSTSEFSISHYTFNRFLTRQSLTPETLWAEVEAYVDRKRGWLVLDDTILDKKHSKKIECTYYQWSGKEH
KVIKGIGLITLIWTDGITSFPIDYRIYDKDVDDKTKNDHLQEMALTAFKRGFTPAFVLFDSWYSGNENLKLINRLGWFYFTRVKKNRMVNPDAQGIVQVS
SLNIPEEGLEVHLKKYGFIRLFHSLNRKGVSRYWATNFLPMNNEDRLVLRSICWTIENYHRAIKELCGVEKCQARKGIIQRNHINCSLRAYLQFEVNKFL
NGVTPYDAQWQIIKVGISEYIQNPKYAL
KVIKGIGLITLIWTDGITSFPIDYRIYDKDVDDKTKNDHLQEMALTAFKRGFTPAFVLFDSWYSGNENLKLINRLGWFYFTRVKKNRMVNPDAQGIVQVS
SLNIPEEGLEVHLKKYGFIRLFHSLNRKGVSRYWATNFLPMNNEDRLVLRSICWTIENYHRAIKELCGVEKCQARKGIIQRNHINCSLRAYLQFEVNKFL
NGVTPYDAQWQIIKVGISEYIQNPKYAL
Blast result :
Comments
ISMhu9 is 38% aa similar to IS701. There are 7 full and 1 partial copies in Methanospirillum hungatei genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.