ISMhu8
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1762 bp
Ends
IR Length : 10/14
IRL : CCTCATCTACTGGATCATAGGCGCATAAGAAAACTTGTTTTAAGTCTAAT
IRR : CCTCACCTCCCGAAAACCTTTAGGCGCATAGACTTAATGCAGTCAAAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGACATTATAGCC | TTATAT | ATAAAATACGTAT | 6 |
DNA sequence
CCTCATCTACTGGATCATAGGCGCATAAGAAAACTTGTTTTAAGTCTAATTTTTACTTTGTTTTAGAATAATTTTGATAAATAACCCTATTTTTAAACTT
TTTAACAGTTACATTTAAATATTTTATGTGCTTATAAATTAGTAACAGAAATGCAGGTTAAAAAACGTATCAAAAAAATTAATGGGATTGAGTACTGGTA
CGAAGATACTCCTTACTATGATAAAGAAAAAAAGCAGATCCGGCATAAATCAAAGTACCTCGGAAAAAACATAGATGGGCAACCTGTTAAGGTTCGAACG
AGTGAAATGATTCCTGCACGAATGGTAGTTTCTTCTGCCCCAAAATTCGCATATAATCACGGGAATCTGCTACCACTTCAAAGTATTACCCAAGAGCTTT
CAATACAGGCAACACTGGAAGAATTTCTTTCAGAATCAGAAACGGATACATTATTAACTCTCGTTTACAACCGAATTCTTCGCCCAACGGCGATGACAAA
TGTTCAGGTGTGGTATGAAGGATCTTCACTATGGCTAAATAACAATAAATTGCCTCTATCTAGCCAAAGAATAAGTGAATTCTTGGCAAACCTTGGTCAA
AAAAACATCCCTGAAGAGTTTATGAGACGATTCGCTGCTCAAATTGAACCAAATGCAACTCTTCTCTATGACATTACCAGTTTATCCAGTTCATCTAAAC
TTTTAGAGAGCCTAGAATATGGATACAATCGGGATAATGATGGCCTTCCTCAGATTAATTTTTCACTGGTAGTGGATAAGGAAAAAGGTATTCCCGTCCG
TTATGATATATATCCAGGAAGTATTGCCGACATCACTACGTTGAAAAATACCATCATACGATTGAGAGATGCTGGTTCAGAACAATTTAGACTAGTAATG
GATAGAGGTTTCTTTTCCCAAACCACATTGGCTGAACTTTTGAGCGAGAATATCCCTTTTATTCTGCCTGCGACCTATCAACTCACGTCAATTAAAGAAT
TAATGAGTAAATCTCAAAATAAGGTAAAACAAGCTGAATATCTTCAGAAATTGGAGAAAGGTCCTATATTTGCAATGCCAGTGAAATTAGAGCATCAATT
AGAGATCGATGATAAACCTCGAACAATTACTGTTGATGGCTATTGCTATTATGACCCAAAAAGAGAACAGGATGAAAGAGATTCTTTTTATGTACAATTA
TTCGACGCGGCTGATAGATTGAAGAAAGCAAGACCACAAAGTTGGAAAAGACCTGAAGTAGTGGTGAATGAAATCGCGAAAGGGTTTGCACGTTACCTGA
AATGGAAATTTACAGACGGAACATTCGAGGTTTCAATAAGACAGAAAGCAGTTACTCAAAGAATAAATCGCCTAGGACGATTTATTCTTTTTTACAACGG
CGAATTAGACTGGCTTTCCTGTCTCACCCTTTATCGTGAGAGAGATGCAGTTGAGAAGTGTTTCTTAAGAATGAAGAACGATTTGGACACTTTACCTCTT
AATGCAAGAAGAGAAGATACGGTGAGGGGTTATTTGTTCATGGTTTTTATAGCCCTTATCATTAGAATGAGATTACAAATGATTTTGAAGGAAACGGGCC
TTTCAAAACAATATTCTGTCGAAAAACTACTTCTCGAACTTGAAAAGATCAAACTTTTTGTACTATCTCAGGGAGAGATTATTCAATCTGAAGTCAGTAA
GAAAAATAGAGAAATTTTGACTGCATTAAGTCTATGCGCCTAAAGGTTTTCGGGAGGTGAGG
TTTAACAGTTACATTTAAATATTTTATGTGCTTATAAATTAGTAACAGAAATGCAGGTTAAAAAACGTATCAAAAAAATTAATGGGATTGAGTACTGGTA
CGAAGATACTCCTTACTATGATAAAGAAAAAAAGCAGATCCGGCATAAATCAAAGTACCTCGGAAAAAACATAGATGGGCAACCTGTTAAGGTTCGAACG
AGTGAAATGATTCCTGCACGAATGGTAGTTTCTTCTGCCCCAAAATTCGCATATAATCACGGGAATCTGCTACCACTTCAAAGTATTACCCAAGAGCTTT
CAATACAGGCAACACTGGAAGAATTTCTTTCAGAATCAGAAACGGATACATTATTAACTCTCGTTTACAACCGAATTCTTCGCCCAACGGCGATGACAAA
TGTTCAGGTGTGGTATGAAGGATCTTCACTATGGCTAAATAACAATAAATTGCCTCTATCTAGCCAAAGAATAAGTGAATTCTTGGCAAACCTTGGTCAA
AAAAACATCCCTGAAGAGTTTATGAGACGATTCGCTGCTCAAATTGAACCAAATGCAACTCTTCTCTATGACATTACCAGTTTATCCAGTTCATCTAAAC
TTTTAGAGAGCCTAGAATATGGATACAATCGGGATAATGATGGCCTTCCTCAGATTAATTTTTCACTGGTAGTGGATAAGGAAAAAGGTATTCCCGTCCG
TTATGATATATATCCAGGAAGTATTGCCGACATCACTACGTTGAAAAATACCATCATACGATTGAGAGATGCTGGTTCAGAACAATTTAGACTAGTAATG
GATAGAGGTTTCTTTTCCCAAACCACATTGGCTGAACTTTTGAGCGAGAATATCCCTTTTATTCTGCCTGCGACCTATCAACTCACGTCAATTAAAGAAT
TAATGAGTAAATCTCAAAATAAGGTAAAACAAGCTGAATATCTTCAGAAATTGGAGAAAGGTCCTATATTTGCAATGCCAGTGAAATTAGAGCATCAATT
AGAGATCGATGATAAACCTCGAACAATTACTGTTGATGGCTATTGCTATTATGACCCAAAAAGAGAACAGGATGAAAGAGATTCTTTTTATGTACAATTA
TTCGACGCGGCTGATAGATTGAAGAAAGCAAGACCACAAAGTTGGAAAAGACCTGAAGTAGTGGTGAATGAAATCGCGAAAGGGTTTGCACGTTACCTGA
AATGGAAATTTACAGACGGAACATTCGAGGTTTCAATAAGACAGAAAGCAGTTACTCAAAGAATAAATCGCCTAGGACGATTTATTCTTTTTTACAACGG
CGAATTAGACTGGCTTTCCTGTCTCACCCTTTATCGTGAGAGAGATGCAGTTGAGAAGTGTTTCTTAAGAATGAAGAACGATTTGGACACTTTACCTCTT
AATGCAAGAAGAGAAGATACGGTGAGGGGTTATTTGTTCATGGTTTTTATAGCCCTTATCATTAGAATGAGATTACAAATGATTTTGAAGGAAACGGGCC
TTTCAAAACAATATTCTGTCGAAAAACTACTTCTCGAACTTGAAAAGATCAAACTTTTTGTACTATCTCAGGGAGAGATTATTCAATCTGAAGTCAGTAA
GAAAAATAGAGAAATTTTGACTGCATTAAGTCTATGCGCCTAAAGGTTTTCGGGAGGTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1593 bp | 530 aa | 151 | 1743 | + | No |
Chemistry : DDE
ORF sequence :
MQVKKRIKKINGIEYWYEDTPYYDKEKKQIRHKSKYLGKNIDGQPVKVRTSEMIPARMVVSSAPKFAYNHGNLLPLQSITQELSIQATLEEFLSESETDT
LLTLVYNRILRPTAMTNVQVWYEGSSLWLNNNKLPLSSQRISEFLANLGQKNIPEEFMRRFAAQIEPNATLLYDITSLSSSSKLLESLEYGYNRDNDGLP
QINFSLVVDKEKGIPVRYDIYPGSIADITTLKNTIIRLRDAGSEQFRLVMDRGFFSQTTLAELLSENIPFILPATYQLTSIKELMSKSQNKVKQAEYLQK
LEKGPIFAMPVKLEHQLEIDDKPRTITVDGYCYYDPKREQDERDSFYVQLFDAADRLKKARPQSWKRPEVVVNEIAKGFARYLKWKFTDGTFEVSIRQKA
VTQRINRLGRFILFYNGELDWLSCLTLYRERDAVEKCFLRMKNDLDTLPLNARREDTVRGYLFMVFIALIIRMRLQMILKETGLSKQYSVEKLLLELEKI
KLFVLSQGEIIQSEVSKKNREILTALSLCA
LLTLVYNRILRPTAMTNVQVWYEGSSLWLNNNKLPLSSQRISEFLANLGQKNIPEEFMRRFAAQIEPNATLLYDITSLSSSSKLLESLEYGYNRDNDGLP
QINFSLVVDKEKGIPVRYDIYPGSIADITTLKNTIIRLRDAGSEQFRLVMDRGFFSQTTLAELLSENIPFILPATYQLTSIKELMSKSQNKVKQAEYLQK
LEKGPIFAMPVKLEHQLEIDDKPRTITVDGYCYYDPKREQDERDSFYVQLFDAADRLKKARPQSWKRPEVVVNEIAKGFARYLKWKFTDGTFEVSIRQKA
VTQRINRLGRFILFYNGELDWLSCLTLYRERDAVEKCFLRMKNDLDTLPLNARREDTVRGYLFMVFIALIIRMRLQMILKETGLSKQYSVEKLLLELEKI
KLFVLSQGEIIQSEVSKKNREILTALSLCA
Blast result :
Comments
ISMhu8 is 64% aa similar to ISMac12. There are 1 full and 1 partial copies in Methanospirillum hungatei genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.