ISMhu5
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1719 bp
Ends
IR Length : 18/21
IRL : CCCATATTCGTCAGATCTATTACAATTTTATATAATAGTAAACTATATAA
IRR : CCCACATTCGCCAGATCTTTTTTCAACTATAGAATTTTTCGTACTCCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAAATGATA | ATAAA | CATCAAAATC | 5 |
DNA sequence
CCCATATTCGTCAGATCTATTACAATTTTATATAATAGTAAACTATATAACTAAGAAGATCTCCATTACTATAATTAATGAAAGATGAGGATGTTTCATT
AGAAATAGACTCCATAAAAACCATTGATCATCTTGGAATCGTTGCAGGCACGTTCCATAAGCTTGGTTTAGCTCCTATAATTGACCGGGCAATCCCTAAA
ATCGGTCAACATCAAATATCAAGTTCTCAAATTTTATTAGCCCTCATTCTCAACGGACTTGGATTCACAGAGAGACGACTCTATCTTTTTCCCGAATACT
GCAAGCATCTTGATTTGGAACGTCTCATAGGTCCGGATATTTCTGCAAAAAATCTTAATGAATCAGTCATTGGTCGCCTTTTGGATAAGATATATGCATA
TGGCCCCAGCAAGCTCTTTACTGATCTTGTCACCCAGATGTTTACTGTTTACAAAGATGGAGTACAGCTTTGTCATGTTGATACAACCAATTTCAGTGTT
CATGGTGAATATGGAAATGAATCCGGAGATGGATGTATCAAAATTACAAAGGGACATCCAAAAGACAAACGCTGGGATTTAAACAGATTTGCCTTAAGTA
TGGTGGTTAACCAACACGGGATACCGATTTTTGCTCGTGCACACGATGGCAACGAATCAGATAAGGAAGTTCTTGTGCAAACAATCCTATCATTGCAAGA
TTCATTCACATTTGATCCTGATGTAATCTTCATGGGTGACAGTGCCCTGTATACTGATAAAAACATCAAAACCCTCGGTCCGGAAACAAGGTGGATATCA
AATGTCCCAGCCACAATAAATGAGATGACAGAGTTACTCAAATCTGATCTTCTCTTCACTCCTACCTCAGATCCACGGTATTCTTGCAGTAGCGTTGACT
CACATTATGGTGGTGTTCCTCAAAAATGGATTGTTGTCTCATCTGAAGAGATGAAAGCTCGAGAATTGAAGACGTTTGAGAAAAACCTCCCTGTGAGGTT
CAAAGCCGCATTAAAAGGGTTAAAACAGATTTCTAAAGTATGCTATGCATGTGAAACAGATGCCAGTAACGCTCTCTTACGCTATCTTAATGAAACACCT
TTAGTAAAATTGGTGGATTCAAGGATCAAGGTCAGTTATAAACGGGAAAATGGTAAGAAGGGGCGCCCAAAAGCAGGAGAAACGTTAATCCCACAATATT
CGATCGATGCAAGGGTTGAACTTGCTCAGGATTTCGTTGAAAGTGAAAAACAGTATCTGGGCAGATTTATTCTTGCAACGAATGTTTTGAGTTTGGATTC
TGAAACGGTTCTGAATCACTATAAAGGACAGATGCTTGTCGAAAAAGGTTTCCGGTTTTTAAAGGACAAATCATTCCGGGTTGCTGAAGTTTATCTGAAA
AGTGAAAAAAGGATCGAGGCTTTATGTATGGTTATGGTTCTCTGCCTCATGGTTTACTCATATACTGAAATGCTGCTGCGAAAAAGGCTGAAAGAAGAAG
ATGAAACGGTGTTGAATCAGAAGAAGAAACCTACCTCTCGTCCAACGCTCAAATGGATTTTTTTTAAATTCAGAGAGATTAAGTCATGTATTATTTCTGT
CGATGATGCACTCCATTCATCTATCCAGAATTTGGATCGAGAACTATTGAAGATATTGCGATTGCTTGGGCCGGAGTACGAAAAATTCTATAGTTGAAAA
AAGATCTGGCGAATGTGGG
AGAAATAGACTCCATAAAAACCATTGATCATCTTGGAATCGTTGCAGGCACGTTCCATAAGCTTGGTTTAGCTCCTATAATTGACCGGGCAATCCCTAAA
ATCGGTCAACATCAAATATCAAGTTCTCAAATTTTATTAGCCCTCATTCTCAACGGACTTGGATTCACAGAGAGACGACTCTATCTTTTTCCCGAATACT
GCAAGCATCTTGATTTGGAACGTCTCATAGGTCCGGATATTTCTGCAAAAAATCTTAATGAATCAGTCATTGGTCGCCTTTTGGATAAGATATATGCATA
TGGCCCCAGCAAGCTCTTTACTGATCTTGTCACCCAGATGTTTACTGTTTACAAAGATGGAGTACAGCTTTGTCATGTTGATACAACCAATTTCAGTGTT
CATGGTGAATATGGAAATGAATCCGGAGATGGATGTATCAAAATTACAAAGGGACATCCAAAAGACAAACGCTGGGATTTAAACAGATTTGCCTTAAGTA
TGGTGGTTAACCAACACGGGATACCGATTTTTGCTCGTGCACACGATGGCAACGAATCAGATAAGGAAGTTCTTGTGCAAACAATCCTATCATTGCAAGA
TTCATTCACATTTGATCCTGATGTAATCTTCATGGGTGACAGTGCCCTGTATACTGATAAAAACATCAAAACCCTCGGTCCGGAAACAAGGTGGATATCA
AATGTCCCAGCCACAATAAATGAGATGACAGAGTTACTCAAATCTGATCTTCTCTTCACTCCTACCTCAGATCCACGGTATTCTTGCAGTAGCGTTGACT
CACATTATGGTGGTGTTCCTCAAAAATGGATTGTTGTCTCATCTGAAGAGATGAAAGCTCGAGAATTGAAGACGTTTGAGAAAAACCTCCCTGTGAGGTT
CAAAGCCGCATTAAAAGGGTTAAAACAGATTTCTAAAGTATGCTATGCATGTGAAACAGATGCCAGTAACGCTCTCTTACGCTATCTTAATGAAACACCT
TTAGTAAAATTGGTGGATTCAAGGATCAAGGTCAGTTATAAACGGGAAAATGGTAAGAAGGGGCGCCCAAAAGCAGGAGAAACGTTAATCCCACAATATT
CGATCGATGCAAGGGTTGAACTTGCTCAGGATTTCGTTGAAAGTGAAAAACAGTATCTGGGCAGATTTATTCTTGCAACGAATGTTTTGAGTTTGGATTC
TGAAACGGTTCTGAATCACTATAAAGGACAGATGCTTGTCGAAAAAGGTTTCCGGTTTTTAAAGGACAAATCATTCCGGGTTGCTGAAGTTTATCTGAAA
AGTGAAAAAAGGATCGAGGCTTTATGTATGGTTATGGTTCTCTGCCTCATGGTTTACTCATATACTGAAATGCTGCTGCGAAAAAGGCTGAAAGAAGAAG
ATGAAACGGTGTTGAATCAGAAGAAGAAACCTACCTCTCGTCCAACGCTCAAATGGATTTTTTTTAAATTCAGAGAGATTAAGTCATGTATTATTTCTGT
CGATGATGCACTCCATTCATCTATCCAGAATTTGGATCGAGAACTATTGAAGATATTGCGATTGCTTGGGCCGGAGTACGAAAAATTCTATAGTTGAAAA
AAGATCTGGCGAATGTGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1620 bp | 539 aa | 78 | 1697 | + | No |
Chemistry : DDE
ORF sequence :
MKDEDVSLEIDSIKTIDHLGIVAGTFHKLGLAPIIDRAIPKIGQHQISSSQILLALILNGLGFTERRLYLFPEYCKHLDLERLIGPDISAKNLNESVIGR
LLDKIYAYGPSKLFTDLVTQMFTVYKDGVQLCHVDTTNFSVHGEYGNESGDGCIKITKGHPKDKRWDLNRFALSMVVNQHGIPIFARAHDGNESDKEVLV
QTILSLQDSFTFDPDVIFMGDSALYTDKNIKTLGPETRWISNVPATINEMTELLKSDLLFTPTSDPRYSCSSVDSHYGGVPQKWIVVSSEEMKARELKTF
EKNLPVRFKAALKGLKQISKVCYACETDASNALLRYLNETPLVKLVDSRIKVSYKRENGKKGRPKAGETLIPQYSIDARVELAQDFVESEKQYLGRFILA
TNVLSLDSETVLNHYKGQMLVEKGFRFLKDKSFRVAEVYLKSEKRIEALCMVMVLCLMVYSYTEMLLRKRLKEEDETVLNQKKKPTSRPTLKWIFFKFRE
IKSCIISVDDALHSSIQNLDRELLKILRLLGPEYEKFYS
LLDKIYAYGPSKLFTDLVTQMFTVYKDGVQLCHVDTTNFSVHGEYGNESGDGCIKITKGHPKDKRWDLNRFALSMVVNQHGIPIFARAHDGNESDKEVLV
QTILSLQDSFTFDPDVIFMGDSALYTDKNIKTLGPETRWISNVPATINEMTELLKSDLLFTPTSDPRYSCSSVDSHYGGVPQKWIVVSSEEMKARELKTF
EKNLPVRFKAALKGLKQISKVCYACETDASNALLRYLNETPLVKLVDSRIKVSYKRENGKKGRPKAGETLIPQYSIDARVELAQDFVESEKQYLGRFILA
TNVLSLDSETVLNHYKGQMLVEKGFRFLKDKSFRVAEVYLKSEKRIEALCMVMVLCLMVYSYTEMLLRKRLKEEDETVLNQKKKPTSRPTLKWIFFKFRE
IKSCIISVDDALHSSIQNLDRELLKILRLLGPEYEKFYS
Blast result :
Comments
ISMhu5 is 65% aa similar to ISMba11. There are 5 full copies in Methanospirillum hungatei genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.