ISMba14

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 1503 bp

Ends


IR Length : 12

IRL : CAGTAGTTCCGAATAACTCAAGTTCCGAATAATGAATTTGGAACATTAGT
IRR : CAGTAGTTCCGATCAGACTGATTTCCGAATGATAAAAACAAACTGAACTT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTATATTTGGAGTCAATGAAAGA0

DNA sequence

CAGTAGTTCCGAATAACTCAAGTTCCGAATAATGAATTTGGAACATTAGTAACTAATTATAATTACCCGAAAAAAAGTTTTATTAGATCATGGAATTCAT
TTTTAATGCCAACAAAAAACGATTCCATGACCTTAGATACAGCCAGCTTGCTGGCTGTATCTTCTGAATTGATTAGCAAATATAATATAATAACTTTGCC
AGAATCTGCAAATTATAAATGTCAGGACACTTTAAACATATTGTTGCATGCCGCAACATTCTCTACAAATTCTCTTGAATCTGCAAGTAATGATCTGCAA
AGAAAAAATCCTGACTTAAGAATACCTTCAGCAGATACTATTTTCAATTACATCAACGAAAATAAAATTGAAGATATTCTTTCCTCCTTTAGAAAAATGA
ATCTTGAGCTTTTCAAGATGATGAAACTTGAAAACAAGATTCACGATATAGCTATTGATTTTCATGACATTTCCTATTATGGAGATAAAAATACTCCTGG
TATTAGGGGAATAAAACTAAAGAATGGTAGTTCATGGGGTAAATCGTTCTGTACTCTTGATATAATTGGAACTTCTCACTTAACACTTGACGTAATAGAC
ATCAATAGTTTGAACAAGAATTATTCTCTTTTAATCGAATCTTTATTCAAAAGACTTCAAACGATAGGTGTAAAAACAGGAACAGTATACCTTGATAGAG
AATTTTTTAACACTGATGTGATTCCAAAATTGGATGAACTTAAAGTCAATTTTGTTATAGCAGTTAAATCGACTCAGGTTATCAATAGAGAACTTAAAAA
TCATCAAAAAGAGTATGGAAATACTTCGACTATTTTTGAATATCAATTTCAGAAAGGAGGACCTTCTTTTAATGTTGTGGCAATATATAATGATGAAAAG
AAAAAGTATCTTCTGTTTGCTACAAACAAAAAAGCAGAATCAATTGAGAAATTTGAAAAGATGATTCCTGAAGAATATAGAAAACGATGGAATATAGAAA
CTGGATATAGAGTGAAAAACGAGTTCAAGATACGATCATGTACAAAATCTCCAGTAGCGAGATTATTGTTCTTTATTATTCAATGTATAATGTACAATGT
GCTAAATATGCTAAAGTCAGTTCTAAAAATTACAGCTTATGAGCTAAAATCATTAATAAATGAAGATATAAACAAAGTTGTAAGATATGGACTAAAGTCG
CTGAATTTTATTCCTGTTAGTGTGTTACTGGATTGTTTGAGATGGGTCAATGAAGAAAGAAATCGAGTGCTACGCACTCGATTAACTATAATATAACTTA
TCTCAAATTAAAGTTTAAGAACCTAATAGCGTATGCTATAAAATTACTCAATGTGATCTGATTTTTTGAAAAATGTAAGTGAAAGTTATAGCTTAAGAAT
TTTAAAATCTGAGCAATAATATAGTCTACTTTGAAAATTAATGGATAAAATGTAAGTTCAGTTTGTTTTTATCATTCGGAAATCAGTCTGATCGGAACTA
CTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1197 bp396 aa1001296+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPTKNDSMTLDTASLLAVSSELISKYNIITLPESANYKCQDTLNILLHAATFSTNSLESASNDLQRKNPDLRIPSADTIFNYINENKIEDILSSFRKMNL
ELFKMMKLENKIHDIAIDFHDISYYGDKNTPGIRGIKLKNGSSWGKSFCTLDIIGTSHLTLDVIDINSLNKNYSLLIESLFKRLQTIGVKTGTVYLDREF
FNTDVIPKLDELKVNFVIAVKSTQVINRELKNHQKEYGNTSTIFEYQFQKGGPSFNVVAIYNDEKKKYLLFATNKKAESIEKFEKMIPEEYRKRWNIETG
YRVKNEFKIRSCTKSPVARLLFFIIQCIMYNVLNMLKSVLKITAYELKSLINEDINKVVRYGLKSLNFIPVSVLLDCLRWVNEERNRVLRTRLTII

 

Blast result :
Comments
ISMba14 is 81% aa similar to ISMma1. This IS is reconstructed in silico, it is disrupted by insertion of ISMba11.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Diect submission GenBank.