ISMba14
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1503 bp
Ends
IR Length : 12
IRL : CAGTAGTTCCGAATAACTCAAGTTCCGAATAATGAATTTGGAACATTAGT
IRR : CAGTAGTTCCGATCAGACTGATTTCCGAATGATAAAAACAAACTGAACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTATATTTG | GAGTCAATGAAAGA | 0 |
DNA sequence
CAGTAGTTCCGAATAACTCAAGTTCCGAATAATGAATTTGGAACATTAGTAACTAATTATAATTACCCGAAAAAAAGTTTTATTAGATCATGGAATTCAT
TTTTAATGCCAACAAAAAACGATTCCATGACCTTAGATACAGCCAGCTTGCTGGCTGTATCTTCTGAATTGATTAGCAAATATAATATAATAACTTTGCC
AGAATCTGCAAATTATAAATGTCAGGACACTTTAAACATATTGTTGCATGCCGCAACATTCTCTACAAATTCTCTTGAATCTGCAAGTAATGATCTGCAA
AGAAAAAATCCTGACTTAAGAATACCTTCAGCAGATACTATTTTCAATTACATCAACGAAAATAAAATTGAAGATATTCTTTCCTCCTTTAGAAAAATGA
ATCTTGAGCTTTTCAAGATGATGAAACTTGAAAACAAGATTCACGATATAGCTATTGATTTTCATGACATTTCCTATTATGGAGATAAAAATACTCCTGG
TATTAGGGGAATAAAACTAAAGAATGGTAGTTCATGGGGTAAATCGTTCTGTACTCTTGATATAATTGGAACTTCTCACTTAACACTTGACGTAATAGAC
ATCAATAGTTTGAACAAGAATTATTCTCTTTTAATCGAATCTTTATTCAAAAGACTTCAAACGATAGGTGTAAAAACAGGAACAGTATACCTTGATAGAG
AATTTTTTAACACTGATGTGATTCCAAAATTGGATGAACTTAAAGTCAATTTTGTTATAGCAGTTAAATCGACTCAGGTTATCAATAGAGAACTTAAAAA
TCATCAAAAAGAGTATGGAAATACTTCGACTATTTTTGAATATCAATTTCAGAAAGGAGGACCTTCTTTTAATGTTGTGGCAATATATAATGATGAAAAG
AAAAAGTATCTTCTGTTTGCTACAAACAAAAAAGCAGAATCAATTGAGAAATTTGAAAAGATGATTCCTGAAGAATATAGAAAACGATGGAATATAGAAA
CTGGATATAGAGTGAAAAACGAGTTCAAGATACGATCATGTACAAAATCTCCAGTAGCGAGATTATTGTTCTTTATTATTCAATGTATAATGTACAATGT
GCTAAATATGCTAAAGTCAGTTCTAAAAATTACAGCTTATGAGCTAAAATCATTAATAAATGAAGATATAAACAAAGTTGTAAGATATGGACTAAAGTCG
CTGAATTTTATTCCTGTTAGTGTGTTACTGGATTGTTTGAGATGGGTCAATGAAGAAAGAAATCGAGTGCTACGCACTCGATTAACTATAATATAACTTA
TCTCAAATTAAAGTTTAAGAACCTAATAGCGTATGCTATAAAATTACTCAATGTGATCTGATTTTTTGAAAAATGTAAGTGAAAGTTATAGCTTAAGAAT
TTTAAAATCTGAGCAATAATATAGTCTACTTTGAAAATTAATGGATAAAATGTAAGTTCAGTTTGTTTTTATCATTCGGAAATCAGTCTGATCGGAACTA
CTG
TTTTAATGCCAACAAAAAACGATTCCATGACCTTAGATACAGCCAGCTTGCTGGCTGTATCTTCTGAATTGATTAGCAAATATAATATAATAACTTTGCC
AGAATCTGCAAATTATAAATGTCAGGACACTTTAAACATATTGTTGCATGCCGCAACATTCTCTACAAATTCTCTTGAATCTGCAAGTAATGATCTGCAA
AGAAAAAATCCTGACTTAAGAATACCTTCAGCAGATACTATTTTCAATTACATCAACGAAAATAAAATTGAAGATATTCTTTCCTCCTTTAGAAAAATGA
ATCTTGAGCTTTTCAAGATGATGAAACTTGAAAACAAGATTCACGATATAGCTATTGATTTTCATGACATTTCCTATTATGGAGATAAAAATACTCCTGG
TATTAGGGGAATAAAACTAAAGAATGGTAGTTCATGGGGTAAATCGTTCTGTACTCTTGATATAATTGGAACTTCTCACTTAACACTTGACGTAATAGAC
ATCAATAGTTTGAACAAGAATTATTCTCTTTTAATCGAATCTTTATTCAAAAGACTTCAAACGATAGGTGTAAAAACAGGAACAGTATACCTTGATAGAG
AATTTTTTAACACTGATGTGATTCCAAAATTGGATGAACTTAAAGTCAATTTTGTTATAGCAGTTAAATCGACTCAGGTTATCAATAGAGAACTTAAAAA
TCATCAAAAAGAGTATGGAAATACTTCGACTATTTTTGAATATCAATTTCAGAAAGGAGGACCTTCTTTTAATGTTGTGGCAATATATAATGATGAAAAG
AAAAAGTATCTTCTGTTTGCTACAAACAAAAAAGCAGAATCAATTGAGAAATTTGAAAAGATGATTCCTGAAGAATATAGAAAACGATGGAATATAGAAA
CTGGATATAGAGTGAAAAACGAGTTCAAGATACGATCATGTACAAAATCTCCAGTAGCGAGATTATTGTTCTTTATTATTCAATGTATAATGTACAATGT
GCTAAATATGCTAAAGTCAGTTCTAAAAATTACAGCTTATGAGCTAAAATCATTAATAAATGAAGATATAAACAAAGTTGTAAGATATGGACTAAAGTCG
CTGAATTTTATTCCTGTTAGTGTGTTACTGGATTGTTTGAGATGGGTCAATGAAGAAAGAAATCGAGTGCTACGCACTCGATTAACTATAATATAACTTA
TCTCAAATTAAAGTTTAAGAACCTAATAGCGTATGCTATAAAATTACTCAATGTGATCTGATTTTTTGAAAAATGTAAGTGAAAGTTATAGCTTAAGAAT
TTTAAAATCTGAGCAATAATATAGTCTACTTTGAAAATTAATGGATAAAATGTAAGTTCAGTTTGTTTTTATCATTCGGAAATCAGTCTGATCGGAACTA
CTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1197 bp | 396 aa | 100 | 1296 | + | No |
Chemistry : DDE
ORF sequence :
MPTKNDSMTLDTASLLAVSSELISKYNIITLPESANYKCQDTLNILLHAATFSTNSLESASNDLQRKNPDLRIPSADTIFNYINENKIEDILSSFRKMNL
ELFKMMKLENKIHDIAIDFHDISYYGDKNTPGIRGIKLKNGSSWGKSFCTLDIIGTSHLTLDVIDINSLNKNYSLLIESLFKRLQTIGVKTGTVYLDREF
FNTDVIPKLDELKVNFVIAVKSTQVINRELKNHQKEYGNTSTIFEYQFQKGGPSFNVVAIYNDEKKKYLLFATNKKAESIEKFEKMIPEEYRKRWNIETG
YRVKNEFKIRSCTKSPVARLLFFIIQCIMYNVLNMLKSVLKITAYELKSLINEDINKVVRYGLKSLNFIPVSVLLDCLRWVNEERNRVLRTRLTII
ELFKMMKLENKIHDIAIDFHDISYYGDKNTPGIRGIKLKNGSSWGKSFCTLDIIGTSHLTLDVIDINSLNKNYSLLIESLFKRLQTIGVKTGTVYLDREF
FNTDVIPKLDELKVNFVIAVKSTQVINRELKNHQKEYGNTSTIFEYQFQKGGPSFNVVAIYNDEKKKYLLFATNKKAESIEKFEKMIPEEYRKRWNIETG
YRVKNEFKIRSCTKSPVARLLFFIIQCIMYNVLNMLKSVLKITAYELKSLINEDINKVVRYGLKSLNFIPVSVLLDCLRWVNEERNRVLRTRLTII
Blast result :
Comments
ISMba14 is 81% aa similar to ISMma1. This IS is reconstructed in silico, it is disrupted by insertion of ISMba11.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Diect submission GenBank.