ISMma18
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 1718 bp
Ends
IR Length : 18/23
IRL : CCTACTTTCCGCAGTAAAATTTCTGAATTTTATATTTTTTAAATTATGCA
IRR : CCCACTTTCCGCACTATTTTTTCATACATAATATTTTTCGTACTTTTCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAGACGGCCAGGT | ATTCAA | TGTGGCTATGGGGAAA | 6 |
DNA sequence
CCTACTTTCCGCAGTAAAATTTCTGAATTTTATATTTTTTAAATTATGCAAGTACTTTTTATAAAATTTCTTCCTATTTTACCGTGATGACTCTCTCTCC
CAGCTCTGAATCCACTACCCATCTTGGTCATTATGGCCTTATTGCTGGCGTATTTGACGAACTTGAAATTTCAGATTTGATTGACAATCTTCTCCCCAAG
AAAAGTAGCCATAACATCCCTCATTCTACTGTGATCAAAGCAATGTGCATTAACGGTTTAGGGTTTACTGAGCGTCGTCTTTACCTATTTCCTGACTTTT
TTGAAAATTTACCCACTGAAAGGTTACTGGGAGAAGGTGTTCTCCCAGAACACCTTAATGATGACGTTTTTGGCAGAACTTTGGATAAAATCTATGAATT
TGGAGCAACCGAACTTTTCAACCATATAATTCTGCAAGCTATGAAACACGTTCCTATTAACCCCCGTTTTTGCCATGCAGATACTACAAATTTCAGTGTT
TATGGTGACTATGACCACGATAATGATGGCAAAACTATCAACATTACTTATGGTCATCCTAAAGACAAAAGAGTCGACTTACTTCGCTTTACCATTTCCA
TGGTTACTGACCAGAAAGGAATTCCTCTTTTCGTAAGAGCATTAGACGGCAACAGTTCCGATAAGAAAGCTCTCATCAAAACCATAAAGGAACTAACACA
GAACCTGAATCTTGATGAGAGAGTCTACCATGTTGCAGACAGCGCATTTTATACTGAAGATAATGTGAAAGAGATAGGAACTAATGCTTTTTTCATATCT
AGAGTTCCTGCAACCATCAATGAAGCAAAGGAACTCTTGATGGCAAATTTAATTCTTAAAACATGCTCTGATGAACGTTATTCTTGTTATGCTGTAAAGT
CCTGTTATGGCGGAGTAGAACAGTTATGGGGTGTATTCTGCTCAGAAGAAATGAAAAAGAAGGAAGAGAAAACGTTTGATGAAAAGATTCTTAAGGAGCT
TGAAGCAGCAGAAAAATCCCTTAAAAAGCTTTCTAATCGTGAATTTGCCTGTGAAGCTGATGCAAGAATGGCTGCTGAACAATGGTTGAAAGAGAATGAA
TCGTATGAGTTCACAAAACTTGATATAAAAAATAGGTCTCACAGACTTGAAAACAAGAAAGGAAGACCAAGGAAAGATGAAAAGGTACAGACTTTCTACC
TGATAGAAGCACAGATAAAACATGATCAGGAGAAAGTAAAGGAAAGAAGAGCAAAGTTAGGAAGGTTCATTCTTGCAACCAATGATCTGGAGTTGACTCC
AGATCAACTCCTGGAATACTATAAGGAACAGGGAACGGTTGAGAGAGGATTCAGGTTCCTGAAAGATAAGAGTTTCAGAGTGTCTGAGGTATACCTGAAA
AAAGAATCCAGAATAGAAGCACTTGCAATGGTAATGGTTCTGTGCTTATTGTTGTATTCAATAGCTGAGTGGAAACTGAGAACAAGATTGGAAGAGGCAA
AAGAAGCTATCAGAAACCAGGTTAAGAAGAAAACACAGACTCCAACCATGAAATGGGTATTCTTCCTCTTCAGAAGAGTAACAGAATTAGTAATCGAAGT
TGATGGAAAAAGGATAAAGAAGGTATTAAATCTGGATGAGGAAACCATTAAAGTGTTGAAACTGATGGGAGAAAAGTACGAAAAATATTATGTATGAAAA
AATAGTGCGGAAAGTGGG
CAGCTCTGAATCCACTACCCATCTTGGTCATTATGGCCTTATTGCTGGCGTATTTGACGAACTTGAAATTTCAGATTTGATTGACAATCTTCTCCCCAAG
AAAAGTAGCCATAACATCCCTCATTCTACTGTGATCAAAGCAATGTGCATTAACGGTTTAGGGTTTACTGAGCGTCGTCTTTACCTATTTCCTGACTTTT
TTGAAAATTTACCCACTGAAAGGTTACTGGGAGAAGGTGTTCTCCCAGAACACCTTAATGATGACGTTTTTGGCAGAACTTTGGATAAAATCTATGAATT
TGGAGCAACCGAACTTTTCAACCATATAATTCTGCAAGCTATGAAACACGTTCCTATTAACCCCCGTTTTTGCCATGCAGATACTACAAATTTCAGTGTT
TATGGTGACTATGACCACGATAATGATGGCAAAACTATCAACATTACTTATGGTCATCCTAAAGACAAAAGAGTCGACTTACTTCGCTTTACCATTTCCA
TGGTTACTGACCAGAAAGGAATTCCTCTTTTCGTAAGAGCATTAGACGGCAACAGTTCCGATAAGAAAGCTCTCATCAAAACCATAAAGGAACTAACACA
GAACCTGAATCTTGATGAGAGAGTCTACCATGTTGCAGACAGCGCATTTTATACTGAAGATAATGTGAAAGAGATAGGAACTAATGCTTTTTTCATATCT
AGAGTTCCTGCAACCATCAATGAAGCAAAGGAACTCTTGATGGCAAATTTAATTCTTAAAACATGCTCTGATGAACGTTATTCTTGTTATGCTGTAAAGT
CCTGTTATGGCGGAGTAGAACAGTTATGGGGTGTATTCTGCTCAGAAGAAATGAAAAAGAAGGAAGAGAAAACGTTTGATGAAAAGATTCTTAAGGAGCT
TGAAGCAGCAGAAAAATCCCTTAAAAAGCTTTCTAATCGTGAATTTGCCTGTGAAGCTGATGCAAGAATGGCTGCTGAACAATGGTTGAAAGAGAATGAA
TCGTATGAGTTCACAAAACTTGATATAAAAAATAGGTCTCACAGACTTGAAAACAAGAAAGGAAGACCAAGGAAAGATGAAAAGGTACAGACTTTCTACC
TGATAGAAGCACAGATAAAACATGATCAGGAGAAAGTAAAGGAAAGAAGAGCAAAGTTAGGAAGGTTCATTCTTGCAACCAATGATCTGGAGTTGACTCC
AGATCAACTCCTGGAATACTATAAGGAACAGGGAACGGTTGAGAGAGGATTCAGGTTCCTGAAAGATAAGAGTTTCAGAGTGTCTGAGGTATACCTGAAA
AAAGAATCCAGAATAGAAGCACTTGCAATGGTAATGGTTCTGTGCTTATTGTTGTATTCAATAGCTGAGTGGAAACTGAGAACAAGATTGGAAGAGGCAA
AAGAAGCTATCAGAAACCAGGTTAAGAAGAAAACACAGACTCCAACCATGAAATGGGTATTCTTCCTCTTCAGAAGAGTAACAGAATTAGTAATCGAAGT
TGATGGAAAAAGGATAAAGAAGGTATTAAATCTGGATGAGGAAACCATTAAAGTGTTGAAACTGATGGGAGAAAAGTACGAAAAATATTATGTATGAAAA
AATAGTGCGGAAAGTGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1614 bp | 537 aa | 84 | 1697 | + | No |
Chemistry : DDE
ORF sequence :
MMTLSPSSESTTHLGHYGLIAGVFDELEISDLIDNLLPKKSSHNIPHSTVIKAMCINGLGFTERRLYLFPDFFENLPTERLLGEGVLPEHLNDDVFGRTL
DKIYEFGATELFNHIILQAMKHVPINPRFCHADTTNFSVYGDYDHDNDGKTINITYGHPKDKRVDLLRFTISMVTDQKGIPLFVRALDGNSSDKKALIKT
IKELTQNLNLDERVYHVADSAFYTEDNVKEIGTNAFFISRVPATINEAKELLMANLILKTCSDERYSCYAVKSCYGGVEQLWGVFCSEEMKKKEEKTFDE
KILKELEAAEKSLKKLSNREFACEADARMAAEQWLKENESYEFTKLDIKNRSHRLENKKGRPRKDEKVQTFYLIEAQIKHDQEKVKERRAKLGRFILATN
DLELTPDQLLEYYKEQGTVERGFRFLKDKSFRVSEVYLKKESRIEALAMVMVLCLLLYSIAEWKLRTRLEEAKEAIRNQVKKKTQTPTMKWVFFLFRRVT
ELVIEVDGKRIKKVLNLDEETIKVLKLMGEKYEKYYV
DKIYEFGATELFNHIILQAMKHVPINPRFCHADTTNFSVYGDYDHDNDGKTINITYGHPKDKRVDLLRFTISMVTDQKGIPLFVRALDGNSSDKKALIKT
IKELTQNLNLDERVYHVADSAFYTEDNVKEIGTNAFFISRVPATINEAKELLMANLILKTCSDERYSCYAVKSCYGGVEQLWGVFCSEEMKKKEEKTFDE
KILKELEAAEKSLKKLSNREFACEADARMAAEQWLKENESYEFTKLDIKNRSHRLENKKGRPRKDEKVQTFYLIEAQIKHDQEKVKERRAKLGRFILATN
DLELTPDQLLEYYKEQGTVERGFRFLKDKSFRVSEVYLKKESRIEALAMVMVLCLLLYSIAEWKLRTRLEEAKEAIRNQVKKKTQTPTMKWVFFLFRRVT
ELVIEVDGKRIKKVLNLDEETIKVLKLMGEKYEKYYV
Blast result :
Comments
ISMma18 is 98% aa similar to ISMac6.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461