ISMba10
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1095 bp
Ends
IR Length : 18/24
IRL : TAGTTCTTAACGTAAACTATTACACATATTAGGTCTTATATCCCTTTATG
IRR : TAGTTCCTTACTTAACAAATTACACTTTTTATTTGCTGATGGAAAGTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAAAATCCAAAT | TA | GTATAAATCCAATT | 2 |
DNA sequence
TAGTTCTTAACGTAAACTATTACACATATTAGGTCTTATATCCCTTTATGGTGGGGAAGGAACAAATTATCATTGATAGAAAGGTAACTGTTGATGAACT
TAACTCCTTGATTACTCATGAAAAGAACTCTAGAGTGCTTAAAAAACTTTATTTTGTCAAATTCAGATATTTAGGAGATTCTGTTGAAGAAGCTGCTATT
AAACTTGGAGTTACTAAGAAAACAGGATATTATTGGCAGGAAGATTGGAACAAAGGCGGCTACACCGCCTTAATGCCACAATTTTGTGGGGGAAGAAGAT
CTAAACTTACCGATGAACAAATGATAAAATTAAGGAATTTACTGAATGAGAAGGATTATTGGTACCAGAGAAGTTTTGGAATTAATAAAGGAAAAATATG
ATGTAGAATATTCACAAAAGCAAATCGGAGTAATACTACATAGTTTTAACATGTATCATTCTAAACCTTATGTTCTAGATTACTGAAGACCACAGAACGC
AGAAGACATTTTAAAAAAAGTTAACAGAAGCAATTCCAGAACATATTGGTTCAGATGAACAATATGTCATAGGTTTTCTGGATGAATCTTCACCACAAAC
AAAAGCTAATACACAACGTTTATGGTCTTTTAAAAAACCTTTGATGATAAAAAATACTGATTATATAAAGGCAAATGCATTTGCCTTTTATTCACTTAAT
GGAAATAATCTTATTGAATTCAAGAATTGTTCAAAGGCAGAAAACGTATGTGAATTTCTGGAAAAAATAGTGGAAAAAAACAAAGGAAAAATAGTTGTGC
TTATACTTGACAATTCAAAAACACATCACTCAATAAAAACAGTAACAAAAGCCAAAGAATTAGGGATTATACTTGTGTTTCTACCACCATATTCACCAGA
TCTAAATCCTGTAGAATATGTATGGAAAACGATAAAAAGAAAAGTATCTGTAACATTTGTTCAATCTAAAGAACATTTAAGAAACATAATCAAAAACGAG
TTTATTAGAATAGAAAACTCATTGTCATTTGCAAAGAGATGGATGGAAACTTTCCATCAGCAAATAAAAAGTGTAATTTGTTAAGTAAGGAACTA
TAACTCCTTGATTACTCATGAAAAGAACTCTAGAGTGCTTAAAAAACTTTATTTTGTCAAATTCAGATATTTAGGAGATTCTGTTGAAGAAGCTGCTATT
AAACTTGGAGTTACTAAGAAAACAGGATATTATTGGCAGGAAGATTGGAACAAAGGCGGCTACACCGCCTTAATGCCACAATTTTGTGGGGGAAGAAGAT
CTAAACTTACCGATGAACAAATGATAAAATTAAGGAATTTACTGAATGAGAAGGATTATTGGTACCAGAGAAGTTTTGGAATTAATAAAGGAAAAATATG
ATGTAGAATATTCACAAAAGCAAATCGGAGTAATACTACATAGTTTTAACATGTATCATTCTAAACCTTATGTTCTAGATTACTGAAGACCACAGAACGC
AGAAGACATTTTAAAAAAAGTTAACAGAAGCAATTCCAGAACATATTGGTTCAGATGAACAATATGTCATAGGTTTTCTGGATGAATCTTCACCACAAAC
AAAAGCTAATACACAACGTTTATGGTCTTTTAAAAAACCTTTGATGATAAAAAATACTGATTATATAAAGGCAAATGCATTTGCCTTTTATTCACTTAAT
GGAAATAATCTTATTGAATTCAAGAATTGTTCAAAGGCAGAAAACGTATGTGAATTTCTGGAAAAAATAGTGGAAAAAAACAAAGGAAAAATAGTTGTGC
TTATACTTGACAATTCAAAAACACATCACTCAATAAAAACAGTAACAAAAGCCAAAGAATTAGGGATTATACTTGTGTTTCTACCACCATATTCACCAGA
TCTAAATCCTGTAGAATATGTATGGAAAACGATAAAAAGAAAAGTATCTGTAACATTTGTTCAATCTAAAGAACATTTAAGAAACATAATCAAAAACGAG
TTTATTAGAATAGAAAACTCATTGTCATTTGCAAAGAGATGGATGGAAACTTTCCATCAGCAAATAAAAAGTGTAATTTGTTAAGTAAGGAACTA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
354 bp | 117 aa | 48 | 401 | + | No |
Description : First part of the transposase
ORF sequence :
MVGKEQIIIDRKVTVDELNSLITHEKNSRVLKKLYFVKFRYLGDSVEEAAIKLGVTKKTGYYWQEDWNKGGYTALMPQFCGGRRSKLTDEQMIKLRNLLN
EKDYWYQRSFGINKGKI
EKDYWYQRSFGINKGKI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
441 bp | 146 aa | 644 | 1084 | + | No |
Description : Second part of the transposase
ORF sequence :
MIKNTDYIKANAFAFYSLNGNNLIEFKNCSKAENVCEFLEKIVEKNKGKIVVLILDNSKTHHSIKTVTKAKELGIILVFLPPYSPDLNPVEYVWKTIKRK
VSVTFVQSKEHLRNIIKNEFIRIENSLSFAKRWMETFHQQIKSVIC
VSVTFVQSKEHLRNIIKNEFIRIENSLSFAKRWMETFHQQIKSVIC
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1037 bp | 343 aa | 48 | 1084 | + | Yes |
Chemistry : DDE
ORF sequence :
MVGKEQIIIDRKVTVDELNSLITHEKNSRVLKKLYFVKFRYLGDSVEEAAIKLGVTKKTGYYWQEDWNKGGYTALMPQFCGGRRSKLTDEQMIKLRNLLN
EKDYWYREVLELIKEKYDVEYSQKQIGVILHSFNMYHSKPYVLDYRPQNAEDILKKLTEAIPEHIGSDEQYVIGFLDESSPQTKANTQRLWSFKKPLMIK
NTDYIKANAFAFYSLNGNNLIEFKNCSKAENVCEFLEKIVEKNKGKIVVLILDNSKTHHSIKTVTKAKELGIILVFLPPYSPDLNPVEYVWKTIKRKVSV
TFVQSKEHLRNIIKNEFIRIENSLSFAKRWMETFHQQIKSVIC
EKDYWYREVLELIKEKYDVEYSQKQIGVILHSFNMYHSKPYVLDYRPQNAEDILKKLTEAIPEHIGSDEQYVIGFLDESSPQTKANTQRLWSFKKPLMIK
NTDYIKANAFAFYSLNGNNLIEFKNCSKAENVCEFLEKIVEKNKGKIVVLILDNSKTHHSIKTVTKAKELGIILVFLPPYSPDLNPVEYVWKTIKRKVSV
TFVQSKEHLRNIIKNEFIRIENSLSFAKRWMETFHQQIKSVIC
Blast result :
Comments
ISMba10 (ORF3) is a fusion ORF in silico . ISMba10 (ORF3) is 63% aa similar to ISArch3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Diect submission GenBank.