ISMbu6
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii DSM 6242 |
DNA section
IS Length : 1252 bp
Ends
IR Length : 22/27
IRL : GATAGCGTCACTAAATTGCTGTAAATTATAATTAGTCCTGTACCTTTGTT
IRR : GGTAGTGTCCCTTAATTGCTGTAACTTTATCCTGTACCCCTCTATGCTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATATTTTGCTAA | GAACACTG | TCCTGAAAATGCAAA | 8 |
DNA sequence
GATAGCGTCACTAAATTGCTGTAAATTATAATTAGTCCTGTACCTTTGTTAGGTTTACAACAACAAAAAGGAACAGGACAATGGAATTATACGATTTAAT
ATCAGATTATCTTAACGACAGCAACGTTTCCTTGAAACCCCTCATAACATACTTCTTAAACGAAGTTATGGAACAGGAAGCAATAGAACAATCTGGTGCA
GGAAAGCACGAACGAAGCATAACAAGAACAGCTCATAGGAATGGGTATCGTGATAGGTCACTGACAACAAGACATGGAGAACTTACACTCAAAAAACCAC
AACTAAGAGACTTTCCGTTCACGACCCAAGTATTTGAAAGATACTCTCGAACTGAAAAAGCAATCGAAAATGCCATTGTTGAATCATATGTTCAAGGTGT
TTCAACAAGAAAAGTTGAAAAAATAATTTCACAATTAGGAGTGGAAAGTATCTCAAGATCACGTGTTTCAAGGATTGCTCAAGATCTTGACAAAACTGTT
CATGGATTTATGAACAAGCCTATTGAGCATGAAATTAAGTATCTTTATGTTGATGCTACTTATCTAAAAGTTAGAGATCGAGTACGATATGTAAACAAAG
CAGTGTTTATTGTTGCAGGTGTAAAGAATGATGGATATCGTGAGATATTAGGTGTTAAGATTGCTGACAGTGAAGAGGCTATGTTTTGGGAGGAAATGTT
TACCGATCTGAAAGAAAGAGGATTAAGAGGGGTAGAACTAGTCATTTCAGATGGGCATAAGGGTATCCAAAGAGCTGTTGAAAGGCAATTCTTAGGAGCA
AGTTGGCAAATGTGTATAGTACATTTGGAAAGACTCATTTTAAAGAAATTACCAAGAAAACATCACAAGGAAGCGATGGAATCATTTAAAGAAGTACAGG
ATGATCAAACAAAACTCTTGGGATTGATGGTTGAATGGGATAGACCTGGATTTGAGAAAGCAGCAGAAACAATTGAGAGATTTCAGCATGGATTGACCAA
TTATCAAGCATTTCCAAAGGAACATTGGAAACGGATAAAGACAACAAATATGATTGAAAGATTGAATAAAGAGGTCAAAAGAAGATCGAAAGTTGTTGGA
GCGTTTCCAAATGATGAATCATTGATGAGATTAGTGATTGCAGTATTGATCGATCAAAATGAAAATTGGATTACGGGAAATAGATATTTAACGATGGAAG
ACTAAGCATAGAGGGGTACAGGATAAAGTTACAGCAATTAAGGGACACTACC
ATCAGATTATCTTAACGACAGCAACGTTTCCTTGAAACCCCTCATAACATACTTCTTAAACGAAGTTATGGAACAGGAAGCAATAGAACAATCTGGTGCA
GGAAAGCACGAACGAAGCATAACAAGAACAGCTCATAGGAATGGGTATCGTGATAGGTCACTGACAACAAGACATGGAGAACTTACACTCAAAAAACCAC
AACTAAGAGACTTTCCGTTCACGACCCAAGTATTTGAAAGATACTCTCGAACTGAAAAAGCAATCGAAAATGCCATTGTTGAATCATATGTTCAAGGTGT
TTCAACAAGAAAAGTTGAAAAAATAATTTCACAATTAGGAGTGGAAAGTATCTCAAGATCACGTGTTTCAAGGATTGCTCAAGATCTTGACAAAACTGTT
CATGGATTTATGAACAAGCCTATTGAGCATGAAATTAAGTATCTTTATGTTGATGCTACTTATCTAAAAGTTAGAGATCGAGTACGATATGTAAACAAAG
CAGTGTTTATTGTTGCAGGTGTAAAGAATGATGGATATCGTGAGATATTAGGTGTTAAGATTGCTGACAGTGAAGAGGCTATGTTTTGGGAGGAAATGTT
TACCGATCTGAAAGAAAGAGGATTAAGAGGGGTAGAACTAGTCATTTCAGATGGGCATAAGGGTATCCAAAGAGCTGTTGAAAGGCAATTCTTAGGAGCA
AGTTGGCAAATGTGTATAGTACATTTGGAAAGACTCATTTTAAAGAAATTACCAAGAAAACATCACAAGGAAGCGATGGAATCATTTAAAGAAGTACAGG
ATGATCAAACAAAACTCTTGGGATTGATGGTTGAATGGGATAGACCTGGATTTGAGAAAGCAGCAGAAACAATTGAGAGATTTCAGCATGGATTGACCAA
TTATCAAGCATTTCCAAAGGAACATTGGAAACGGATAAAGACAACAAATATGATTGAAAGATTGAATAAAGAGGTCAAAAGAAGATCGAAAGTTGTTGGA
GCGTTTCCAAATGATGAATCATTGATGAGATTAGTGATTGCAGTATTGATCGATCAAAATGAAAATTGGATTACGGGAAATAGATATTTAACGATGGAAG
ACTAAGCATAGAGGGGTACAGGATAAAGTTACAGCAATTAAGGGACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1125 bp | 374 aa | 82 | 1206 | + | No |
Chemistry : DDE
ORF sequence :
MELYDLISDYLNDSNVSLKPLITYFLNEVMEQEAIEQSGAGKHERSITRTAHRNGYRDRSLTTRHGELTLKKPQLRDFPFTTQVFERYSRTEKAIENAIV
ESYVQGVSTRKVEKIISQLGVESISRSRVSRIAQDLDKTVHGFMNKPIEHEIKYLYVDATYLKVRDRVRYVNKAVFIVAGVKNDGYREILGVKIADSEEA
MFWEEMFTDLKERGLRGVELVISDGHKGIQRAVERQFLGASWQMCIVHLERLILKKLPRKHHKEAMESFKEVQDDQTKLLGLMVEWDRPGFEKAAETIER
FQHGLTNYQAFPKEHWKRIKTTNMIERLNKEVKRRSKVVGAFPNDESLMRLVIAVLIDQNENWITGNRYLTMED
ESYVQGVSTRKVEKIISQLGVESISRSRVSRIAQDLDKTVHGFMNKPIEHEIKYLYVDATYLKVRDRVRYVNKAVFIVAGVKNDGYREILGVKIADSEEA
MFWEEMFTDLKERGLRGVELVISDGHKGIQRAVERQFLGASWQMCIVHLERLILKKLPRKHHKEAMESFKEVQDDQTKLLGLMVEWDRPGFEKAAETIER
FQHGLTNYQAFPKEHWKRIKTTNMIERLNKEVKRRSKVVGAFPNDESLMRLVIAVLIDQNENWITGNRYLTMED
Blast result :
Comments
ISMbu6 is 80% aa similar to ISMma16.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank