ISMba9
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1268 bp
Ends
IR Length : 21/27
IRL : GGCAGTGTAGCGAAAGTTCTGTAAATTATGATTGACTCTGTATCCTTTTT
IRR : GGCAGTGTGCCTAATCTTCTGTGAATTTTACTCTATACCCTATTCTTCTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGCAGTGTAGCGAAAGTTCTGTAAATTATGATTGACTCTGTATCCTTTTTCTTCATCACAAAAAATAGGAGGCGGAGTCAATGGTTAATCTATTCTCATT
CATCAAAGAGTATCTTGTCGATCAGGAAGACGGAATTCGTCATCTAATTACCTGGTTTTTGAATCTTGTCATGGAGGAGGAAGCCCTCCTCCAATCTTGT
GCACAACGTTATGAGCGTACTGATTCACGAAAAGCTAGTAGAAACGACTACAAATCTCGAATTCTCCTTACCAAATATGGAGAACTTGAATTGTTAAAGC
CTCAGTTCCGTGAATTTCCTTTTGAAACTCAAGTATTTGAAAAGTATTCCAGGGTTGAAAAGTCCATATTAGCTGATGTAGCGGAATCTTACCTTCAAGG
AGTTTCCACCCGACGGGTGGAAAAGGTCATGACTGCTTTAGGAGTAGAGGGAATCTCAGCCTCTTCTGTTTCTAGAATTACTAAAGAACTTGATAAAGAA
CTTGATGAAAAAGTTGAAGAATTTCTCTCAAAGCCAATAGAACATGAAATTCCTTACCTTTTTGTTGATGCGACTTATCTTAAAGTAAGAGATGGACTCC
ATTATGAAAATAAAGCTCTTTTTGTAGTTGCTGGAATTAGAGATGATGGTTTACGTGAGATTCTTGGAGTAAGATTGGCAGACAGTGAAGACTCTCTATT
CTGGTAAGATCTATTCGAAGACCTTGGTTAAGAGGCTTAAAGTTAGTTGTTTCTGATGGTCATAAAGGAATACAAAAAGCAGTGAGAGAATCCCTTATTG
GATCAAGCTGGCAGATGTGTCACGTTCATCTGAGAAGACAAGTTCTAAAAAAGGTTCCAAAAAAGAAACAGAAAGAAGTATCAGAGAAAATAAAAGAAGC
ATTGGTAGACCGTCAGAAGTTACAGGATTTGATAAGGGAACTGGATAATATGGGATATAAAAGTGCAGCTGATACTCTTGAACATTTTCAGTATGATGTG
ATGAACTACATGCAGTTTCCACACAGAGTCATTGGAGAAGAATAAGGACAACAAATATGATGGAGAGAACTAACAAGGAAATAAAAAGAAGAAGCAGAGT
TGTGAGAGCATTTCCGAACCAGGAATAAGTATTGAGACTGGTAGTCTCAATACTTATTGATATAAATGATGAATGGATTACAGGAAACAGGTATATAGTA
ATGGAGCAGTAATCAAAAAAGAAGAATAGGGTATAGAGTAAAATTCACAGAAGATTAGGCACACTGCC
CATCAAAGAGTATCTTGTCGATCAGGAAGACGGAATTCGTCATCTAATTACCTGGTTTTTGAATCTTGTCATGGAGGAGGAAGCCCTCCTCCAATCTTGT
GCACAACGTTATGAGCGTACTGATTCACGAAAAGCTAGTAGAAACGACTACAAATCTCGAATTCTCCTTACCAAATATGGAGAACTTGAATTGTTAAAGC
CTCAGTTCCGTGAATTTCCTTTTGAAACTCAAGTATTTGAAAAGTATTCCAGGGTTGAAAAGTCCATATTAGCTGATGTAGCGGAATCTTACCTTCAAGG
AGTTTCCACCCGACGGGTGGAAAAGGTCATGACTGCTTTAGGAGTAGAGGGAATCTCAGCCTCTTCTGTTTCTAGAATTACTAAAGAACTTGATAAAGAA
CTTGATGAAAAAGTTGAAGAATTTCTCTCAAAGCCAATAGAACATGAAATTCCTTACCTTTTTGTTGATGCGACTTATCTTAAAGTAAGAGATGGACTCC
ATTATGAAAATAAAGCTCTTTTTGTAGTTGCTGGAATTAGAGATGATGGTTTACGTGAGATTCTTGGAGTAAGATTGGCAGACAGTGAAGACTCTCTATT
CTGGTAAGATCTATTCGAAGACCTTGGTTAAGAGGCTTAAAGTTAGTTGTTTCTGATGGTCATAAAGGAATACAAAAAGCAGTGAGAGAATCCCTTATTG
GATCAAGCTGGCAGATGTGTCACGTTCATCTGAGAAGACAAGTTCTAAAAAAGGTTCCAAAAAAGAAACAGAAAGAAGTATCAGAGAAAATAAAAGAAGC
ATTGGTAGACCGTCAGAAGTTACAGGATTTGATAAGGGAACTGGATAATATGGGATATAAAAGTGCAGCTGATACTCTTGAACATTTTCAGTATGATGTG
ATGAACTACATGCAGTTTCCACACAGAGTCATTGGAGAAGAATAAGGACAACAAATATGATGGAGAGAACTAACAAGGAAATAAAAAGAAGAAGCAGAGT
TGTGAGAGCATTTCCGAACCAGGAATAAGTATTGAGACTGGTAGTCTCAATACTTATTGATATAAATGATGAATGGATTACAGGAAACAGGTATATAGTA
ATGGAGCAGTAATCAAAAAAGAAGAATAGGGTATAGAGTAAAATTCACAGAAGATTAGGCACACTGCC
Protein section
ORF number : 0
Comments
ISMba9 is 90% similar to ISMma16. There are stop codons and frameshift in the ORF coding for the transposase ...
References
1]Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission Genbank.