ISMma14
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 1529 bp
Ends
IR Length : 22/30
IRL : GTAACTATTCAGGTAGCCTTAACGAGGCTACACATTTTTCCTCGTTCCGA
IRR : GTAACTGCTCAGAGTATAGTTAACGGCGCTCCTATGAGCGCCGCACGAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAGCTTTT | GAATAATC | TTGAATAAAA | 8 |
TAATATAATT | AAAAAATT | AAGAAATTCA | 8 |
ATAAATCAAA | AAATTTAA | TTAAATAAAA | 8 |
GCTTTCTTTT | CAATTCTT | ATTCATTTGT | 8 |
TTTTTCAGTT | CTTTATTT | TTTCCTTTTC | 8 |
AGTTTTAGTT | TTTATTTT | TATAATAACT | 8 |
ATAAATCTTT | GTTAATTT | TTCTAATTAA | 8 |
GTAAATACAT | AAATTTTA | CAGTAAAATA | 8 |
TAAAATAGTA | AATTTTTC | TTAAGTATTA | 8 |
DNA sequence
GTAACTATTCAGGTAGCCTTAACGAGGCTACACATTTTTCCTCGTTCCGAGGAAAAATTGGATATAAAATGATTCCTTTTTAGCTTTATGAAACGTGATG
AGATTCTTTCTTACTGTGCTTCAAATCCTGAAATTATTGTAGCTTACATTGAGAGTTTAGAATCTCAAGTTAAAGAACTCACTGAAAGACTTGTAGCCTT
AGAATCTCGTTTAAATCAAAACAGTCGTAACAGCAGTCGACCTCCTTCTACTGATTATTTTGTCAAAGAGAAACCTAATCCCAAGAGTCTGCGTAAACCA
AGCGGGAAGAAACCTGGAGGTCAGGAAGGTCATCCAGGCACGACTCTTGATATGGTTGATCATCCTGAGTAGGTAATAGAACATTCTTTGACCTGCTGCA
AAGAATGCGGATCTACCCTTGAGAATGTTGAAGTTGAAGCTTATGAGAGAAGACAGGTCTTTGACATTCCTCCCGTAAATCTAATTGTTACAGAACATAA
AAGTCAGATTAAAACCTGTCCTTGTTGTGGAAAGTTGAATAAAGCCGTTTTTCCCGAATCAGTGAAATATCCGGTTCAGTATGGCCCTAATATTTTAGCT
TCAGCTATTTACTGTAAAAATTACCAGTTTGTTCCTTATGATAGAATTTCTGAGTTATTTGAAGACATTATGGGAATAAAAATCTGTCCTGCTACGATAA
TTAGAGCAGAAAGAGAATGTTTCCAGAATTTAGAGGAATTTGAAAACGTTATTAGAGAGAAGTTATTAGCCTCGCCTGTAATCAATTTTGATGAAACTGG
TATGAAGATTGAAGGAAAAAGACACTGGCTTCATGTAGCTTCTAATGAAAAATACACATGTTATTTTGCTCATACAAAAAGAGGAGCAGAAGCAATAGAT
GCTATGGGAATTCTTCCGAAGTTTAAGGGAGTAGCAGTTCATGATGGATGGAAACCTTACAACGTTTATGATTGTGATCATGCTCTGTGTAACGCTCATT
TACAGAGAGAACTTACAGGAATTGAAGAGAACTATAAACAGACATGGGCTAAAGAGATGAATGAACTGCTCACTGAGATGAAGAAATACACTGATGAGTG
TAAAGAGCAATTAAGAGAACCTGATTTTGAGCAAATTAAAGCATTGGAAGAAAGGTTTGATGCAATTATCATTAGAGCGCTTGAAGAAAATCCGCATTCT
CTAAATCCTGAAAAACAGGGAAAACGCGGTAAAAATCCAAAAACAAAATCAAGGAATCTGCTGGATAGGTTTATAGAACACAAAGAAAAGATTCTGAGAT
TCCTGACAGATTTGAAAGTTCCATTTGATAATAATCAGGCAGAAAGAGATATCAGGATGATGAAACTACAGCAGAAAATATCGGGAACTTTCAGAAAAGC
AATGGGAGCGCAAGCTTTCTGCAGAATTAGGGCGTACATTTCTACAGGAAAAAAGAACGGTTTACCTGTTTTAGAGGGTATTCGTGCGGCGCTCATAGGA
GCGCCGTTAACTATACTCTGAGCAGTTAC
AGATTCTTTCTTACTGTGCTTCAAATCCTGAAATTATTGTAGCTTACATTGAGAGTTTAGAATCTCAAGTTAAAGAACTCACTGAAAGACTTGTAGCCTT
AGAATCTCGTTTAAATCAAAACAGTCGTAACAGCAGTCGACCTCCTTCTACTGATTATTTTGTCAAAGAGAAACCTAATCCCAAGAGTCTGCGTAAACCA
AGCGGGAAGAAACCTGGAGGTCAGGAAGGTCATCCAGGCACGACTCTTGATATGGTTGATCATCCTGAGTAGGTAATAGAACATTCTTTGACCTGCTGCA
AAGAATGCGGATCTACCCTTGAGAATGTTGAAGTTGAAGCTTATGAGAGAAGACAGGTCTTTGACATTCCTCCCGTAAATCTAATTGTTACAGAACATAA
AAGTCAGATTAAAACCTGTCCTTGTTGTGGAAAGTTGAATAAAGCCGTTTTTCCCGAATCAGTGAAATATCCGGTTCAGTATGGCCCTAATATTTTAGCT
TCAGCTATTTACTGTAAAAATTACCAGTTTGTTCCTTATGATAGAATTTCTGAGTTATTTGAAGACATTATGGGAATAAAAATCTGTCCTGCTACGATAA
TTAGAGCAGAAAGAGAATGTTTCCAGAATTTAGAGGAATTTGAAAACGTTATTAGAGAGAAGTTATTAGCCTCGCCTGTAATCAATTTTGATGAAACTGG
TATGAAGATTGAAGGAAAAAGACACTGGCTTCATGTAGCTTCTAATGAAAAATACACATGTTATTTTGCTCATACAAAAAGAGGAGCAGAAGCAATAGAT
GCTATGGGAATTCTTCCGAAGTTTAAGGGAGTAGCAGTTCATGATGGATGGAAACCTTACAACGTTTATGATTGTGATCATGCTCTGTGTAACGCTCATT
TACAGAGAGAACTTACAGGAATTGAAGAGAACTATAAACAGACATGGGCTAAAGAGATGAATGAACTGCTCACTGAGATGAAGAAATACACTGATGAGTG
TAAAGAGCAATTAAGAGAACCTGATTTTGAGCAAATTAAAGCATTGGAAGAAAGGTTTGATGCAATTATCATTAGAGCGCTTGAAGAAAATCCGCATTCT
CTAAATCCTGAAAAACAGGGAAAACGCGGTAAAAATCCAAAAACAAAATCAAGGAATCTGCTGGATAGGTTTATAGAACACAAAGAAAAGATTCTGAGAT
TCCTGACAGATTTGAAAGTTCCATTTGATAATAATCAGGCAGAAAGAGATATCAGGATGATGAAACTACAGCAGAAAATATCGGGAACTTTCAGAAAAGC
AATGGGAGCGCAAGCTTTCTGCAGAATTAGGGCGTACATTTCTACAGGAAAAAAGAACGGTTTACCTGTTTTAGAGGGTATTCGTGCGGCGCTCATAGGA
GCGCCGTTAACTATACTCTGAGCAGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1434 bp | 477 aa | 88 | 1521 | + | No |
Chemistry : DDE
ORF sequence :
MKRDEILSYCASNPEIIVAYIESLESQVKELTERLVALESRLNQNSRNSSRPPSTDYFVKEKPNPKSLRKPSGKKPGGQEGHPGTTLDMVDHPE*VIEHS
LTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQFVPYDRISELFEDIMGIKIC
PATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFAHTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHAL
CNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKEQLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKE
KILRFLTDLKVPFDNNQAERDIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL
LTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQFVPYDRISELFEDIMGIKIC
PATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFAHTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHAL
CNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKEQLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKE
KILRFLTDLKVPFDNNQAERDIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL
Blast result :
Comments
ISMma14 is 94% aa similar to ISMma13.
There is a Stop codon at position 95 of the transposase.
There is a Stop codon at position 95 of the transposase.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461