ISMma13
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 1534 bp
Ends
IR Length : 20/28
IRL : GTAACTATTCAGGCAGCCTTTTAAAGGCTACAATTTTTCCTCTTTTCGAG
IRR : GTAACTATTCAGGTTATAGTTAACGGCGCTCCCTTGAGCGCCGCTATAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGAAATATAA | AATTTAAT | TTATAAATAAAG | 8 |
AAAATTTTATAA | TATACTTA | TTAATATATTTA | 8 |
TAAGTAAATCTA | TTTTTATT | TATTTTTCTTTA | 8 |
DNA sequence
GTAACTATTCAGGCAGCCTTTTAAAGGCTACAATTTTTCCTCTTTTCGAGGAAAAATTGGATATAAATTGAATCCTATTTTGTTTCGTTATCATGCTTAC
ACGTGAAGAGATTCTTGCTTTGTGTGCTTCAAACCCTGAAGTCATTGCTTACATTGTGAGTCTTGAAACTCAAATTAAAGAACTTACTGAAAGGTTGATA
GCCTTAGAATCTCGTTTAAACCAAAACAGTCGTAACAGCAGTCGCCCTCCTTCTACTGATTTTTTTGTCAAGGAGAAACCTAATCCCAAGAGTCTCCGTA
AAAAGAGCGGAAAGAAACCTGGAGGTCAAGATGGTCATCCTGGAACAACTCTTGAAATGGTTGATGATCCTGAGTAGGTAATAGAACATTCTTTGAGTTG
CTGCAAAGAATGTGGCCATACTCTTGAGAATGTTGAAGTTGAAGCCTATGAGAAAAGACAGGTCTTTGATATTCCTCCTGTAAACCTGATTGTTACAGAA
CACAAAAGCCAGATTAAGACCTGTCCTCACTGTGGAAGAATAAATAAAGCTGTTTTTCCTGAATCAGTAAAATATCCAGTTCAGTATGGTCCAAATATTT
TAGCTTCAGCTATTTACTGTAAAAATCACCATTTTATCCCCTATGAAAGAATTTCTGAGTTTTTTGAGGATATTATGGGAATAAAAATCTGTCCTGCTAC
GATAATTAGAGCAGAAAAAGAATGTTTCCAGAATTTAGAGTGTTTTGAAAACATTATTCGAGAGAAATTAATGACTTCTTATGTTGTCCATTTTGATGAA
ACTGGTATGAAAATCGAAGGAAAAAGACACTGGCTTCATGTAGCTTCTAATGACAAATACACCTGTTATTTACCTCACTCAAAAAGAGGAGCAGAAGCAA
TAGACGCTATGGGAATTCTTCCGGAGTTTAAGGGAGTAGCAGTTCACGACGGATGGAAACCTTACAACGTTTATGACTGTGATCATGCTCTCTGTAATGC
TCATTTACAGAGAGAACTTACTGGAATTGAAGAGAACTATAAACAGCAGTGGGCTAAAGAAATGAATAAATTACTCACTGAGATGAAAAAGTATACTGAT
GAATGTAAGGAGCAAGTCAAAGAACTGGACTTTGAGCAAATTAAAGCATTGGAAGAAAGGTTTGATGCTATAATCATGAAAGGGATTGAGGAAAATCCAC
AATCTCTAAATCCTGAAAAACAAGGAAAACGTGGAAAGAATCCAAAGACAAAAGCAAGGAATCTGTTGGATAGGTTTATAGAACACAAAGAAAAGATCCT
GAGATTCCTGAAAGATTTGAAAGTTCCGTTTGAGAATAATCAGGCAGAAAGAGATATCAGGATGATGAAACTACAGCAAAAGATATCAGGAACTTTCAGA
ACAACACAAGGAGCGCAAGCTTTCTGCAGAATGAGAGCTTACATCTCTACAATTAGAAAGAACGGATTACTTGTTTTGGAGGGTATTATAGCGGCGCTCA
AGGGAGCGCCGTTAACTATAACCTGAATAGTTAC
ACGTGAAGAGATTCTTGCTTTGTGTGCTTCAAACCCTGAAGTCATTGCTTACATTGTGAGTCTTGAAACTCAAATTAAAGAACTTACTGAAAGGTTGATA
GCCTTAGAATCTCGTTTAAACCAAAACAGTCGTAACAGCAGTCGCCCTCCTTCTACTGATTTTTTTGTCAAGGAGAAACCTAATCCCAAGAGTCTCCGTA
AAAAGAGCGGAAAGAAACCTGGAGGTCAAGATGGTCATCCTGGAACAACTCTTGAAATGGTTGATGATCCTGAGTAGGTAATAGAACATTCTTTGAGTTG
CTGCAAAGAATGTGGCCATACTCTTGAGAATGTTGAAGTTGAAGCCTATGAGAAAAGACAGGTCTTTGATATTCCTCCTGTAAACCTGATTGTTACAGAA
CACAAAAGCCAGATTAAGACCTGTCCTCACTGTGGAAGAATAAATAAAGCTGTTTTTCCTGAATCAGTAAAATATCCAGTTCAGTATGGTCCAAATATTT
TAGCTTCAGCTATTTACTGTAAAAATCACCATTTTATCCCCTATGAAAGAATTTCTGAGTTTTTTGAGGATATTATGGGAATAAAAATCTGTCCTGCTAC
GATAATTAGAGCAGAAAAAGAATGTTTCCAGAATTTAGAGTGTTTTGAAAACATTATTCGAGAGAAATTAATGACTTCTTATGTTGTCCATTTTGATGAA
ACTGGTATGAAAATCGAAGGAAAAAGACACTGGCTTCATGTAGCTTCTAATGACAAATACACCTGTTATTTACCTCACTCAAAAAGAGGAGCAGAAGCAA
TAGACGCTATGGGAATTCTTCCGGAGTTTAAGGGAGTAGCAGTTCACGACGGATGGAAACCTTACAACGTTTATGACTGTGATCATGCTCTCTGTAATGC
TCATTTACAGAGAGAACTTACTGGAATTGAAGAGAACTATAAACAGCAGTGGGCTAAAGAAATGAATAAATTACTCACTGAGATGAAAAAGTATACTGAT
GAATGTAAGGAGCAAGTCAAAGAACTGGACTTTGAGCAAATTAAAGCATTGGAAGAAAGGTTTGATGCTATAATCATGAAAGGGATTGAGGAAAATCCAC
AATCTCTAAATCCTGAAAAACAAGGAAAACGTGGAAAGAATCCAAAGACAAAAGCAAGGAATCTGTTGGATAGGTTTATAGAACACAAAGAAAAGATCCT
GAGATTCCTGAAAGATTTGAAAGTTCCGTTTGAGAATAATCAGGCAGAAAGAGATATCAGGATGATGAAACTACAGCAAAAGATATCAGGAACTTTCAGA
ACAACACAAGGAGCGCAAGCTTTCTGCAGAATGAGAGCTTACATCTCTACAATTAGAAAGAACGGATTACTTGTTTTGGAGGGTATTATAGCGGCGCTCA
AGGGAGCGCCGTTAACTATAACCTGAATAGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1434 bp | 477 aa | 93 | 1526 | + | No |
Chemistry : DDE
ORF sequence :
MLTREEILALCASNPEVIAYIVSLETQIKELTERLIALESRLNQNSRNSSRPPSTDFFVKEKPNPKSLRKKSGKKPGGQDGHPGTTLEMVDDPE*VIEHS
LSCCKECGHTLENVEVEAYEKRQVFDIPPVNLIVTEHKSQIKTCPHCGRINKAVFPESVKYPVQYGPNILASAIYCKNHHFIPYERISEFFEDIMGIKIC
PATIIRAEKECFQNLECFENIIREKLMTSYVVHFDETGMKIEGKRHWLHVASNDKYTCYLPHSKRGAEAIDAMGILPEFKGVAVHDGWKPYNVYDCDHAL
CNAHLQRELTGIEENYKQQWAKEMNKLLTEMKKYTDECKEQVKELDFEQIKALEERFDAIIMKGIEENPQSLNPEKQGKRGKNPKTKARNLLDRFIEHKE
KILRFLKDLKVPFENNQAERDIRMMKLQQKISGTFRTTQGAQAFCRMRAYISTIRKNGLLVLEGIIAALKGAPLTIT
LSCCKECGHTLENVEVEAYEKRQVFDIPPVNLIVTEHKSQIKTCPHCGRINKAVFPESVKYPVQYGPNILASAIYCKNHHFIPYERISEFFEDIMGIKIC
PATIIRAEKECFQNLECFENIIREKLMTSYVVHFDETGMKIEGKRHWLHVASNDKYTCYLPHSKRGAEAIDAMGILPEFKGVAVHDGWKPYNVYDCDHAL
CNAHLQRELTGIEENYKQQWAKEMNKLLTEMKKYTDECKEQVKELDFEQIKALEERFDAIIMKGIEENPQSLNPEKQGKRGKNPKTKARNLLDRFIEHKE
KILRFLKDLKVPFENNQAERDIRMMKLQQKISGTFRTTQGAQAFCRMRAYISTIRKNGLLVLEGIIAALKGAPLTIT
Blast result :
Comments
ISMma13 is 96% aa similar to ISMac24.
There is a Stop codon at position 95 of the transposase.
There is a Stop codon at position 95 of the transposase.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461