ISMba5
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 872 bp
Ends
IR Length : 15/17
IRL : GAGCCTATCCGAAAAGTAGAATACCTATATTTTATGGTAATATTTATTAG
IRR : GAACCTATCCGAAAAATCCTGCTGCTCTGAATGTTATCCATGCACATGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTATAAAAGCGTCTCAC | TTA | GTAAAAGTAAAAATC | 3 |
DNA sequence
GAGCCTATCCGAAAAGTAGAATACCTATATTTTATGGTAATATTTATTAGTGTCAACACGAAAAAACGGACATGACTACGAGATCTCTAACGACTTCTGG
AATAAAATCAAACCATTATTACCTCTCCCTAAATCTAAAAAGAAGCCTGGAAGACCTAGAAAAGATGATAAGAGAATCTTAAGTGGTATACTGTATCTTC
TTCGTACTGGTTGCCAATGGAAATCTTTGCCACGATTTTATGGAGCTCCAAGCACTGTTCATGATCGATTTCAAGAATGGCAAAGATCTGGCTTCTTTGA
AAAAATGTGGCAATCTGGTCTAATGGAGTACGAGAATAAGAATGGATTAGAGTGGGAGTGGCAAGCAATTGACGGTGCTATGACAAAAGCACCATTAGGT
GGATCAGGAACCGGAGCTAATCCAACTGATCGCGGCAAGAAAGGTACAAAAAGGAGTATTTTAACAGATGGTAAAGGTATACCACTTTCAGTAACTGTTG
ATGGAGCAAATCGTCACGATAAAAAGCTTGTAAAAAGGACGTTGGATGCCATTATTTTTGAAAGACCTTTCCCAGATGAGGGAATTCAGAACATGTGTAT
GGATAAAGGATATGATTTTCCTGATATCAGAGAATTGGTCAAAGAATATGGTTATACCGCCCATATCAAAAGTCGTGGAGAAGAAAACATAAGAATAGAG
ATACCAGGTTTTAGGGCAAGAAGGTGGGTTGTAGAAAGGACACATTCATGGCTAAACAGATTCAGAAGACTGCTTATTAGATGGGAAAAGAAAATCGAGA
ATTACCTTGCTATGCTTCATTTCGCATGTGCATGGATAACATTCAGAGCAGCAGGATTTTTCGGATAGGTTC
AATAAAATCAAACCATTATTACCTCTCCCTAAATCTAAAAAGAAGCCTGGAAGACCTAGAAAAGATGATAAGAGAATCTTAAGTGGTATACTGTATCTTC
TTCGTACTGGTTGCCAATGGAAATCTTTGCCACGATTTTATGGAGCTCCAAGCACTGTTCATGATCGATTTCAAGAATGGCAAAGATCTGGCTTCTTTGA
AAAAATGTGGCAATCTGGTCTAATGGAGTACGAGAATAAGAATGGATTAGAGTGGGAGTGGCAAGCAATTGACGGTGCTATGACAAAAGCACCATTAGGT
GGATCAGGAACCGGAGCTAATCCAACTGATCGCGGCAAGAAAGGTACAAAAAGGAGTATTTTAACAGATGGTAAAGGTATACCACTTTCAGTAACTGTTG
ATGGAGCAAATCGTCACGATAAAAAGCTTGTAAAAAGGACGTTGGATGCCATTATTTTTGAAAGACCTTTCCCAGATGAGGGAATTCAGAACATGTGTAT
GGATAAAGGATATGATTTTCCTGATATCAGAGAATTGGTCAAAGAATATGGTTATACCGCCCATATCAAAAGTCGTGGAGAAGAAAACATAAGAATAGAG
ATACCAGGTTTTAGGGCAAGAAGGTGGGTTGTAGAAAGGACACATTCATGGCTAAACAGATTCAGAAGACTGCTTATTAGATGGGAAAAGAAAATCGAGA
ATTACCTTGCTATGCTTCATTTCGCATGTGCATGGATAACATTCAGAGCAGCAGGATTTTTCGGATAGGTTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
819 bp | 272 aa | 50 | 868 | + | No |
Chemistry : DDE
ORF sequence :
MSTRKNGHDYEISNDFWNKIKPLLPLPKSKKKPGRPRKDDKRILSGILYLLRTGCQWKSLPRFYGAPSTVHDRFQEWQRSGFFEKMWQSGLMEYENKNGL
EWEWQAIDGAMTKAPLGGSGTGANPTDRGKKGTKRSILTDGKGIPLSVTVDGANRHDKKLVKRTLDAIIFERPFPDEGIQNMCMDKGYDFPDIRELVKEY
GYTAHIKSRGEENIRIEIPGFRARRWVVERTHSWLNRFRRLLIRWEKKIENYLAMLHFACAWITFRAAGFFG
EWEWQAIDGAMTKAPLGGSGTGANPTDRGKKGTKRSILTDGKGIPLSVTVDGANRHDKKLVKRTLDAIIFERPFPDEGIQNMCMDKGYDFPDIRELVKEY
GYTAHIKSRGEENIRIEIPGFRARRWVVERTHSWLNRFRRLLIRWEKKIENYLAMLHFACAWITFRAAGFFG
Blast result :
Comments
ISMba5 is 90% aa similar to ISMac11.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank