ISMma12
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei |
DNA section
IS Length : 875 bp
Ends
IR Length : 16/17
IRL : GAGCCTATCCGAAAAGTAGAATAACTGCGATATTGTGTAATGTTTATTAG
IRR : GTGCCTATCCGAAAAGTCCCGCTGCTCTAAATGTTATGCATGCACATGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGATCTTGAAGCCCAT | TTA | GTCGCCCTTAGT | 3 |
DNA sequence
GAGCCTATCCGAAAAGTAGAATAACTGCGATATTGTGTAATGTTTATTAGTGACACGACGAAAAAACGGGCACGACTACGAGATTTCTGATAAATTGTGG
AATAAAATCAAACCTCTACTCCCACTCCCTAAACCGAAAAAGAAGCCTGGAAGACCTAGAAAGGATGATAGGAAAATAATGAGTGGTATTTTTTATGTAC
TCCTTACAGGTTGCCAATGGAAATTATTGCCACGATTTTATGGAGCCCCAAGTACCGTACATGATCGATTTCAGGAATGGCGAAAATCAAGCTTATTTGA
GAAAATGTGGAAAGCTGGTTTATTGGATTATGACAAAAATAAAGGATTAGAATGGGAATGGCAAGCAATTGATGGGGCCATGACAAAAGCACCATTGGGT
GGAGCTGGAACAGGAGCTAATCCTACTGACCGTGGTAAAAAAGGTACAAAAAGGAGTCTGTTAACAGATGGTAAAGGTATACCACTTTCGGTAACTGTAG
ATGGAGCTAATCGTCACGATAAAAAGCTTGTAAAAGGAACTCTTGATGCCATTATTTTTCAAAGACCTTCTCTAGATGAGGGAATTCAGAATATCTGTAT
GGATAAGGGATATGATTTTCCTGATATCAGAGAATTGGTTAAAGAATATGGATATATAGCACATATAAGAAGAAGGGGAGAAGAAAACATAAGAAAAAAA
GAGATACCAGGTTACAGAGCAAGAAGGTGGGTTGTGGAAAGGACACATTCCTGGCTCAATAGATTCAGAAGGCTGCTTATTAGATGGGAAAAAAAGATTG
AGAATTACTATGCGATGCTTCAGTTAGCATGTGCATGCATAACATTTAGAGCAGCGGGACTTTTCGGATAGGCAC
AATAAAATCAAACCTCTACTCCCACTCCCTAAACCGAAAAAGAAGCCTGGAAGACCTAGAAAGGATGATAGGAAAATAATGAGTGGTATTTTTTATGTAC
TCCTTACAGGTTGCCAATGGAAATTATTGCCACGATTTTATGGAGCCCCAAGTACCGTACATGATCGATTTCAGGAATGGCGAAAATCAAGCTTATTTGA
GAAAATGTGGAAAGCTGGTTTATTGGATTATGACAAAAATAAAGGATTAGAATGGGAATGGCAAGCAATTGATGGGGCCATGACAAAAGCACCATTGGGT
GGAGCTGGAACAGGAGCTAATCCTACTGACCGTGGTAAAAAAGGTACAAAAAGGAGTCTGTTAACAGATGGTAAAGGTATACCACTTTCGGTAACTGTAG
ATGGAGCTAATCGTCACGATAAAAAGCTTGTAAAAGGAACTCTTGATGCCATTATTTTTCAAAGACCTTCTCTAGATGAGGGAATTCAGAATATCTGTAT
GGATAAGGGATATGATTTTCCTGATATCAGAGAATTGGTTAAAGAATATGGATATATAGCACATATAAGAAGAAGGGGAGAAGAAAACATAAGAAAAAAA
GAGATACCAGGTTACAGAGCAAGAAGGTGGGTTGTGGAAAGGACACATTCCTGGCTCAATAGATTCAGAAGGCTGCTTATTAGATGGGAAAAAAAGATTG
AGAATTACTATGCGATGCTTCAGTTAGCATGTGCATGCATAACATTTAGAGCAGCGGGACTTTTCGGATAGGCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 50 | 871 | + | No |
Chemistry : DDE
ORF sequence :
MTRRKNGHDYEISDKLWNKIKPLLPLPKPKKKPGRPRKDDRKIMSGIFYVLLTGCQWKLLPRFYGAPSTVHDRFQEWRKSSLFEKMWKAGLLDYDKNKGL
EWEWQAIDGAMTKAPLGGAGTGANPTDRGKKGTKRSLLTDGKGIPLSVTVDGANRHDKKLVKGTLDAIIFQRPSLDEGIQNICMDKGYDFPDIRELVKEY
GYIAHIRRRGEENIRKKEIPGYRARRWVVERTHSWLNRFRRLLIRWEKKIENYYAMLQLACACITFRAAGLFG
EWEWQAIDGAMTKAPLGGAGTGANPTDRGKKGTKRSLLTDGKGIPLSVTVDGANRHDKKLVKGTLDAIIFQRPSLDEGIQNICMDKGYDFPDIRELVKEY
GYIAHIRRRGEENIRKKEIPGYRARRWVVERTHSWLNRFRRLLIRWEKKIENYYAMLQLACACITFRAAGLFG
Blast result :
Comments
ISMma12 is 90% aa similar to ISMac11.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461