ISMbu1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ZP_0014730 | ND | Methanococcoides burtonii | Methanococcoides burtonii |
DNA section
IS Length : 1141 bp
Ends
IR Length : 17/22
IRL : GAGAATTCCGATAAACCTCGGAAACAGACGCAATATTTATAATATATTAC
IRR : GAGAATTGCGATTAACTGCTGATTTTTTTCAAAGCAAATTTTTCCAGCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATAAATAGAA | TATA | CTTAAGCAAAGCTC | 4 |
DNA sequence
GAGAATTCCGATAAACCTCGGAAACAGACGCAATATTTATAATATATTACAATAATTTTGTATTATGTCCTTAACAAACTTTGCTTTTAAAGAAGAGTAC
AAACGTCTTGAAAATCTCGGTGACAAGCTCTCTGAAATTGAATCTCTCATCGATTGGAAACCATTTCGTCCAATTATAGCAGAGATGTATATCAATAAAA
CAGAGTTCGGTGGCAGACCAAACGTTGATGAAATCGTCATGCTCAAAATGTTAGTATTGCAACAATGGCATGGACTATCTGACCCTGAACTTGAAAGACA
AGCTACTGACAGAATTTCCTTTAGGAAATTCTTGGGCTTTCCTGCAAAAATTCCAGATCATACTACTGTTTGGGCATTTAGAGAACGAATTGCTCAATCA
GGAAAAGAAGATGAAATCTGGAATGAAATGCAAAGACAACTTGATAAGAAAGGTTTGAGGATCAAACAAGGTATGATTCAGGATGCAACATTTATACATG
CTGATCCAGGACATGCAAATCTTGATACTCCTCGTGGAAATGAAGCAAAGACCAGAAGATGTAAGGACGGTACATGGACAAAAAAGGCATCTAAGTCACA
TTTTGGATATAAACTACATACCATTGAAGATACCGAATATGATCTGATAAGGAGATATAGGACAACTACTGCCTCAGTTCATGATAGTCAGGTGGATCTT
TCTGAAGAAGGCGAAGTTGTTTACAGAGATAGAGGTTACTTTGGTGCAATTTCAAAAGGATATGATGCAACTATGCAAAGGGGCGTGCGAGGTCATCCTA
TTGGTATTAGGGATAAGATGAGAAACAAAAGAATAAGCAGGAAAAGAGCAAAGGGAGAAAGACCTTATGCTGTTATCAAAAATGTGTTTACGTCAGGATT
TGTAAGAGTAACAACGTTGGCAAGAGTAAATGTCAAAATGGCGATTACAGCATTCAGCTATAATCTCTATCAATTGAGGACAATAAGAAGAAAATCATTA
GGATGAATAGCGGTAGCTATTCAAAAAAGTTGGAAAGTATATAAATAGATACTAGCAAACTGCTGGAAATAGAGAGAAAAGCTCAAAATTTTAGCTGGAA
AAATTTGCTTTGAAAAAAATCAGCAGTTAATCGCAATTCTC
AAACGTCTTGAAAATCTCGGTGACAAGCTCTCTGAAATTGAATCTCTCATCGATTGGAAACCATTTCGTCCAATTATAGCAGAGATGTATATCAATAAAA
CAGAGTTCGGTGGCAGACCAAACGTTGATGAAATCGTCATGCTCAAAATGTTAGTATTGCAACAATGGCATGGACTATCTGACCCTGAACTTGAAAGACA
AGCTACTGACAGAATTTCCTTTAGGAAATTCTTGGGCTTTCCTGCAAAAATTCCAGATCATACTACTGTTTGGGCATTTAGAGAACGAATTGCTCAATCA
GGAAAAGAAGATGAAATCTGGAATGAAATGCAAAGACAACTTGATAAGAAAGGTTTGAGGATCAAACAAGGTATGATTCAGGATGCAACATTTATACATG
CTGATCCAGGACATGCAAATCTTGATACTCCTCGTGGAAATGAAGCAAAGACCAGAAGATGTAAGGACGGTACATGGACAAAAAAGGCATCTAAGTCACA
TTTTGGATATAAACTACATACCATTGAAGATACCGAATATGATCTGATAAGGAGATATAGGACAACTACTGCCTCAGTTCATGATAGTCAGGTGGATCTT
TCTGAAGAAGGCGAAGTTGTTTACAGAGATAGAGGTTACTTTGGTGCAATTTCAAAAGGATATGATGCAACTATGCAAAGGGGCGTGCGAGGTCATCCTA
TTGGTATTAGGGATAAGATGAGAAACAAAAGAATAAGCAGGAAAAGAGCAAAGGGAGAAAGACCTTATGCTGTTATCAAAAATGTGTTTACGTCAGGATT
TGTAAGAGTAACAACGTTGGCAAGAGTAAATGTCAAAATGGCGATTACAGCATTCAGCTATAATCTCTATCAATTGAGGACAATAAGAAGAAAATCATTA
GGATGAATAGCGGTAGCTATTCAAAAAAGTTGGAAAGTATATAAATAGATACTAGCAAACTGCTGGAAATAGAGAGAAAAGCTCAAAATTTTAGCTGGAA
AAATTTGCTTTGAAAAAAATCAGCAGTTAATCGCAATTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 313 aa | 69 | 1007 | + | No |
Chemistry : DDE
ORF sequence :
MSLTNFAFKEEYKRLENLGDKLSEIESLIDWKPFRPIIAEMYINKTEFGGRPNVDEIVMLKMLVLQQWHGLSDPELERQATDRISFRKFLGFPAKIPDHT
TVWAFRERISQAGKEDEIWNEMQRQLNKKGLKIKQGMIQDATFIHADPGHANLDTPRGNEAKTRRCKDGTWTKKASKSHFGYKLHTIEDTEYDLIRRYRT
TTASVHDSQVDLSEEGEVVYRDRGYFGAISKGYDATMQRGVRGHPIGIRDKMRNKRISRKRAKGERPYAVIKNVFTSGFVRVTTLARVNVKMAITAFSYN
LYQLRTIRRKSLG
TVWAFRERISQAGKEDEIWNEMQRQLNKKGLKIKQGMIQDATFIHADPGHANLDTPRGNEAKTRRCKDGTWTKKASKSHFGYKLHTIEDTEYDLIRRYRT
TTASVHDSQVDLSEEGEVVYRDRGYFGAISKGYDATMQRGVRGHPIGIRDKMRNKRISRKRAKGERPYAVIKNVFTSGFVRVTTLARVNVKMAITAFSYN
LYQLRTIRRKSLG
Blast result :
Comments
ISMbu1 is 52% aa similar to IS1194.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank