ISMba4

  • Family ISNCY
  • Group ISM1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 1621 bp

Ends


IR Length : 20/24

IRL : GACTCAGTTCCAAAATCTAGTGATAAAAATAAGTGTAACATCACTACATA
IRR : GGCACAATTCCATAATCTAGTGATTTTTCTTATTGTTACTTCCTTAAACC

Insertion site


Left flankDirect repeatRight flankDR Length
CCTATTGATTGAACTATAGTAGTATTTTAATG8

DNA sequence

GACTCAGTTCCAAAATCTAGTGATAAAAATAAGTGTAACATCACTACATAAATTTATAATTCTGTAATTATGTAATGATGTTACGGCACAACGATGGTAA
CTATAAATCTTAATCTTAATAACTTTTCGGACCTCTCGGTTCTCTTAAATCTTTTTGATAGTTTTGACAATGATTACGAATATACTGCAAGAGGAGTTTT
TCGCAGAAAAACTCCTCCAACTTGTCCCATTTGTAATACTCGTATGGTTCATAATGGCTATAATTCATACACCAAAAAAGGTCTTGGAGCAATCAAGATT
GGGAAATCTAAATGCTCAAATTGTGGTAGTACATGCGAAGAAGGTCATAGTTTTTGGGAACATCTGAAAACTTTACTTTTTGATTTATTCAATAATTTTT
TCCAGGTACTCAGATATCATAACGTTTCTTATGATGGAATTTCTGATATAATGGCCTTTATACTTCCAAGATCAAAAAGTACTATTTTTAGAGCATTCAA
CGAAAAAATGGAAAAGGAGAATGTTCCAATCTCAGGAATACACGTATAGTACATTATGATGAACCGCATCCGGAAAAAGGAAGGTGTCAGAAATACCATT
TAACCTTATTGGACGCAAAAACTCATAGATCAATAGCAGATGAACTTTTCGAAGATAAAAGTCCAGAAACCATCAAAAAATTTCTACGGAAAAATCTCGA
TTCATCAGAACCTGTGTTTATTGTTACGGATTTTGATAAGAGATATCCTAATATATTAAAGGAAGTTTTTGGAGAGAAGTTAGTGCATCAATATTGTTTG
ATGCACTTAAACAAGCTTATAGTTAGTGATTTCCCAAAGAAAACAACTATTGAACAAGAATTATTAAAATACAAGTTATTGAATATATTTTATAATAGTG
AAAATGAGATCTAATTTCTGGAAAAACTTCTATCTGAAGAACTTAACGTAATTAATAGCGAAGAAAAACATTTAAAATGGAGTAAAAAGGTAAAAAAGGA
ATTTAATCAATATAGATATAAGTTAAAGCTGAAAAGGAGGCGAAATAAAGAAAATCTTCCATTTAATAGTCTTGAAAAAGCAAAATATAACTTCAATAAA
TTAATGGAAAATATAAGAACATATGATGACGCGATTCAAAAAAGATTGTGGATGATCAATAAACACTGGTTAAATCTTACTTTGTTCCATCATCTTCCTG
GAGCTCCGGCGACAAATAACCCTATTGAAAGTTACTATTCAAAAAGTCTAAAAATGGATAGTAAGAAGCAGTTTAGAACTGATAAAGGAATTGAAAATAA
GATTAAACTTACTGAAATGAGAAGACTAAATTTACTCAAGAAACCAAAAAAGTCATTTTTAGAATTGTTCAGATTATTTACTCTATTTTAAGTTGTAGTA
AGTTATTTTAATAAAAATTTCATGTTGGGAAGTAGCGGAGCGTATCGATTTTAAGTGAAAGAGTCAGTAAAAAGATCAAATGAATAAACAGATTCTTTGG
CAAAAATGCCAAAGAATCTGTTTTTCAAGATTATTGCAGCTTTTTGAGGTAGTTAGCAAAGAAAAAATGTAGGTTTAAGGAAGTAACAATAAGAAAAATC
ACTAGATTATGGAATTGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1298 bp431 aa941391+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

 

Blast result :
Comments
The tranposase of ISMba4 is inactive.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct Submission GenBank