ISMma11
- Family ISNCY
- Group ISM1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei |
DNA section
IS Length : 1619 bp
Ends
IR Length : 16/24
IRL : GACTCAGTTCCAAAATCTAGTGATAAAAGTAAATGTAACATCACTACACA
IRR : GACACAATTTCATAATTTAGTGATTTCTCATTTTTTCCTTCCTTAAATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATATTTACA | GGATTTTTT | ACGTGTTTAAT | 9 |
DNA sequence
GACTCAGTTCCAAAATCTAGTGATAAAAGTAAATGTAACATCACTACACAAAATTATAATTCTATAATTATGTAATGATGTTACGGCAAAAACAATGGTA
ACTATAAACCTTACTCTTAATAACTTTTCGGAGCTCCCTTCTCTCTTAGACGTTTTTGGTTGTTTTGGAAACGATTACGAATACACTACACAAGGAATTT
TTCGTAGAAAAATTCCTCCAGCCTGTTCAATTTGTAGTACTCCAATGGTTCATAATGGCTATAATCCCCATACCAAACAAGGTCTTGGCGAAATCAACAT
TGGTAGATATAAATGCTCAAATTGTGGTCGTACATACGAAGAAGATTATAGTTTTTGGGGAGATCTGAAAGCTTTACTTTTTGATTCATTCAATGATTTC
TTCAAGTTACTCAGATACCATAAAGTTTCATACGATGGAATTTCTGATATAATGGAATTTATCTATCCAAGATCAAGAAGCACTATTTTAAGAGCATTCT
ACAAAGAAATGGAACAGGAAACTGTTCCATTTTCAGAAAATATACATATGGTACACTATGACGAACAACATCCAAAAGAAGGACGCTGTCAGAAATACCG
TTTAACCTTACTGGACGCAAAAACTCAAACAACAATAGCAGATGACCTTTTTGATGATAAGAGTCCAGAAACAATCAAGGAATTTCTACGGAAAAATCTT
GATGCATCAGAACCTGTGTTTATCGTTACGGATTTTGATAAGAGATATCCTGATATATTAAAGGAAATTTTTGGAGATAAGTTAGTTCATCAATATTGTT
TGATGCACTTAAACAAGCTTATAGTTAGTGATTTCCCAAAGAATACAACGATTGAACAGGAACTATTGAAGTACAGGTTATTGAATATATTTTACAATCG
AGAGAATGAAATTAAGTTTCTGGAAGAACTTCTATCTGAAGAACTCAACGTAATTAATAATGAAGAAAAACATCAAGAATGGAGTAAAAAAGCAAAAAAG
GAATTTAACCAATTTAGACGTAAATTAAAGCTTGAAAGAAGACGAAAAAAGGAAAATCTTCCACTTAATAGTCTTGAAAAAGCAAGAGATAACTTCGATA
AATTAATGGAAAATATAAGAACATACGATCAAACGATTCAAAAACGATTATGGATGATCAATAAACACTGGTTAAATCTTACTTTGTTCCATTATCTTCC
AGGAGCGCCAGCGACAAATAACCCTATAGAAAGCTATTATTCTAAAAGTCTAAAAACTGATAACAAGAAGCAGTTCAGGACTGATAAAGGAATTGGGAAC
CAGATTAAACTTACTCAAATGAGAAGATTAAATTTGCTCAAGAAACCACAAAAGTCATTTCTGGAATTGTTCAGATTATTTAATCCATTTAAGCTTTAGT
AATCTAGTTTGAGAGAGGAGTTAAGGATTATGTAGCGGAGCGTATCGATTTAAGGCAAAAAATAAAGTGAAAAGTTAAAGGAATAAAAGAATTCTTTGGC
ATGAATGCCAAAGAAATTGTTTCTCAAGGAATATTACAGTTTATTTGGGCAGTTAGTAGAGAAAAGTGAAGATTTAAGGAAGGAAAAAATGAGAAATCAC
TAAATTATGAAATTGTGTC
ACTATAAACCTTACTCTTAATAACTTTTCGGAGCTCCCTTCTCTCTTAGACGTTTTTGGTTGTTTTGGAAACGATTACGAATACACTACACAAGGAATTT
TTCGTAGAAAAATTCCTCCAGCCTGTTCAATTTGTAGTACTCCAATGGTTCATAATGGCTATAATCCCCATACCAAACAAGGTCTTGGCGAAATCAACAT
TGGTAGATATAAATGCTCAAATTGTGGTCGTACATACGAAGAAGATTATAGTTTTTGGGGAGATCTGAAAGCTTTACTTTTTGATTCATTCAATGATTTC
TTCAAGTTACTCAGATACCATAAAGTTTCATACGATGGAATTTCTGATATAATGGAATTTATCTATCCAAGATCAAGAAGCACTATTTTAAGAGCATTCT
ACAAAGAAATGGAACAGGAAACTGTTCCATTTTCAGAAAATATACATATGGTACACTATGACGAACAACATCCAAAAGAAGGACGCTGTCAGAAATACCG
TTTAACCTTACTGGACGCAAAAACTCAAACAACAATAGCAGATGACCTTTTTGATGATAAGAGTCCAGAAACAATCAAGGAATTTCTACGGAAAAATCTT
GATGCATCAGAACCTGTGTTTATCGTTACGGATTTTGATAAGAGATATCCTGATATATTAAAGGAAATTTTTGGAGATAAGTTAGTTCATCAATATTGTT
TGATGCACTTAAACAAGCTTATAGTTAGTGATTTCCCAAAGAATACAACGATTGAACAGGAACTATTGAAGTACAGGTTATTGAATATATTTTACAATCG
AGAGAATGAAATTAAGTTTCTGGAAGAACTTCTATCTGAAGAACTCAACGTAATTAATAATGAAGAAAAACATCAAGAATGGAGTAAAAAAGCAAAAAAG
GAATTTAACCAATTTAGACGTAAATTAAAGCTTGAAAGAAGACGAAAAAAGGAAAATCTTCCACTTAATAGTCTTGAAAAAGCAAGAGATAACTTCGATA
AATTAATGGAAAATATAAGAACATACGATCAAACGATTCAAAAACGATTATGGATGATCAATAAACACTGGTTAAATCTTACTTTGTTCCATTATCTTCC
AGGAGCGCCAGCGACAAATAACCCTATAGAAAGCTATTATTCTAAAAGTCTAAAAACTGATAACAAGAAGCAGTTCAGGACTGATAAAGGAATTGGGAAC
CAGATTAAACTTACTCAAATGAGAAGATTAAATTTGCTCAAGAAACCACAAAAGTCATTTCTGGAATTGTTCAGATTATTTAATCCATTTAAGCTTTAGT
AATCTAGTTTGAGAGAGGAGTTAAGGATTATGTAGCGGAGCGTATCGATTTAAGGCAAAAAATAAAGTGAAAAGTTAAAGGAATAAAAGAATTCTTTGGC
ATGAATGCCAAAGAAATTGTTTCTCAAGGAATATTACAGTTTATTTGGGCAGTTAGTAGAGAAAAGTGAAGATTTAAGGAAGGAAAAAATGAGAAATCAC
TAAATTATGAAATTGTGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 95 | 1399 | + | No |
Chemistry : Unknow
ORF sequence :
MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEINIGRYKCSNCGRTYEEDYSFWGDLKALLFDSFN
DFFKLLRYHKVSYDGISDIMEFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRK
NLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLNKLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKA
KKEFNQFRRKLKLERRRKKENLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI
GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL
DFFKLLRYHKVSYDGISDIMEFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRK
NLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLNKLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKA
KKEFNQFRRKLKLERRRKKENLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI
GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL
Blast result :
Comments
ISMma11 is 39% ISMst1 aa similar. There are 6 complete copies in Methanosarcina mazei genome. There are also 3 complete and one partial copy of MITES (l=199 bp, IR 20/24 and DR=8).
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461