ISMbu2
- Family ISNCY
- Group ISM1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AADH02000018 | ND | Methanococcoides burtonii | Methanococcoides burtonii DSM 6242 |
DNA section
IS Length : 1310 bp
Ends
IR Length : 25
IRL : GGGGCTGTCAAAAACTTTGGTGTTAGAAAGTTACAACTAATCAATCACAA
IRR : GGGGCTGTCAAAAACTTTGGTGTTAAACTTTATTTGATATGTTACCTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGTTTATTGTATATAG | GATAGCGTACACTT | 0 |
DNA sequence
GGGGCTGTCAAAAACTTTGGTGTTAGAAAGTTACAACTAATCAATCACAATGAATATATATTATGAAAGTGGATGAATGGTTATGACACCTAATATAACA
TCCACTTTCGCATCCCACATTGACTCAATACAACTTAAATTAACTGATTGTTTTTCAGGCATTACAACTTTTGAAAAAGCAATCATATCCCATTTTAGTT
CAACTGGAAAAAGGAACATTCGAAATGAGAAGGAACTTGTTTTGCATGCTGACAACCATTTTGATCTTTTACATCCTCAGTGCCCCGTATGTGGTTCCAA
TAAAATAAATAAACAAGAGTATTATACGCGTAAGTTAAAGTTAGCAGAATTTGGAAGTCAAATAATCCACGTACGAAGGTATTATTGCAAAAAATGCTCT
AAAAGATTTACAACACCTCTTGACCCAATTGTCAAAAAAGGTCATCAATATGCCAGAACATATGAACAGTATATTGAAGACAGTTATGAAACAGGATATT
GTTCATTTAGACATTTACAAAAAATATTCAGTTCACTTTATGATTGCTCCCCATCCCATCAAACCATCTATAACTGGATAAGGAAATCAAACAAAGAAGT
GACTTCAGAAGCTACAAAAGAATACTCGGGTTATTATTGCTATGATGAACAATATTTAAAATTGAATGGAAGACGATTTTATAGGCTCAGTTTGATTGAT
TCAATATTCAATAAACCAGTTGAAGAAATGATCGTTACTAATCTTGAATATGATACAGTAAAGGATTTTATTGAAAAAGCAACATCAAACAGACTAATTT
ATGCAATATCTACTGATCATCGGATAAAGTACAAATCGATAATGGATAAACTTGAGATAAAACATCAACTTTGCATATTTTATTTGTATAAATTGATTGG
AAACGATGTATTCAAAAAGTTAAAATCAAAATTTGTTAGTTACCGTGAAAAGATAAACATGTGTTTAACATTTACAGAAATAAAAGAGATATTTAGAACA
TATGATGTAAGTATCGCAATCAATAGGCTTCAAAATTTAATAGACGGTATTAAGAAAATTCCATATGCTCTTTATAGATCAATAGACAAAATCACTAGAG
ATTTTAATAGATTGACTTTGTTTATGGTAGATGGATTTGTTTCTAAAACAACAAATCCAATCGAAAATTATTACAGACAAACATTACCTAATCAGCTAAA
AAGAATATTTAAAACACCCGAATGAGTGTTGAATTATTTGGCTGTAAAAAAGAAATACTGGGAAGGTAACATATCAAATAAAGTTTAACACCAAAGTTTT
TGACAGCCCC
TCCACTTTCGCATCCCACATTGACTCAATACAACTTAAATTAACTGATTGTTTTTCAGGCATTACAACTTTTGAAAAAGCAATCATATCCCATTTTAGTT
CAACTGGAAAAAGGAACATTCGAAATGAGAAGGAACTTGTTTTGCATGCTGACAACCATTTTGATCTTTTACATCCTCAGTGCCCCGTATGTGGTTCCAA
TAAAATAAATAAACAAGAGTATTATACGCGTAAGTTAAAGTTAGCAGAATTTGGAAGTCAAATAATCCACGTACGAAGGTATTATTGCAAAAAATGCTCT
AAAAGATTTACAACACCTCTTGACCCAATTGTCAAAAAAGGTCATCAATATGCCAGAACATATGAACAGTATATTGAAGACAGTTATGAAACAGGATATT
GTTCATTTAGACATTTACAAAAAATATTCAGTTCACTTTATGATTGCTCCCCATCCCATCAAACCATCTATAACTGGATAAGGAAATCAAACAAAGAAGT
GACTTCAGAAGCTACAAAAGAATACTCGGGTTATTATTGCTATGATGAACAATATTTAAAATTGAATGGAAGACGATTTTATAGGCTCAGTTTGATTGAT
TCAATATTCAATAAACCAGTTGAAGAAATGATCGTTACTAATCTTGAATATGATACAGTAAAGGATTTTATTGAAAAAGCAACATCAAACAGACTAATTT
ATGCAATATCTACTGATCATCGGATAAAGTACAAATCGATAATGGATAAACTTGAGATAAAACATCAACTTTGCATATTTTATTTGTATAAATTGATTGG
AAACGATGTATTCAAAAAGTTAAAATCAAAATTTGTTAGTTACCGTGAAAAGATAAACATGTGTTTAACATTTACAGAAATAAAAGAGATATTTAGAACA
TATGATGTAAGTATCGCAATCAATAGGCTTCAAAATTTAATAGACGGTATTAAGAAAATTCCATATGCTCTTTATAGATCAATAGACAAAATCACTAGAG
ATTTTAATAGATTGACTTTGTTTATGGTAGATGGATTTGTTTCTAAAACAACAAATCCAATCGAAAATTATTACAGACAAACATTACCTAATCAGCTAAA
AAGAATATTTAAAACACCCGAATGAGTGTTGAATTATTTGGCTGTAAAAAAGAAATACTGGGAAGGTAACATATCAAATAAAGTTTAACACCAAAGTTTT
TGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1149 bp | 382 aa | 77 | 1225 | + | No |
Chemistry : Unknow
ORF sequence :
MVMTPNITSTFASHIDSIQLKLTDCFSGITTFEKAIISHFSSTGKRNIRNEKELVLHADNHFDLLHPQCPVCGSNKINKQEYYTRKLKLAEFGSQIIHVR
RYYCKKCSKRFTTPLDPIVKKGHQYARTYEQYIEDSYETGYCSFRHLQKIFSSLYDCSPSHQTIYNWIRKSNKEVTSEATKEYSGYYCYDEQYLKLNGRR
FYRLSLIDSIFNKPVEEMIVTNLEYDTVKDFIEKATSNRLIYAISTDHRIKYKSIMDKLEIKHQLCIFYLYKLIGNDVFKKLKSKFVSYREKINMCLTFT
EIKEIFRTYDVSIAINRLQNLIDGIKKIPYALYRSIDKITRDFNRLTLFMVDGFVSKTTNPIENYYRQTLPNQLKRIFKTPE
RYYCKKCSKRFTTPLDPIVKKGHQYARTYEQYIEDSYETGYCSFRHLQKIFSSLYDCSPSHQTIYNWIRKSNKEVTSEATKEYSGYYCYDEQYLKLNGRR
FYRLSLIDSIFNKPVEEMIVTNLEYDTVKDFIEKATSNRLIYAISTDHRIKYKSIMDKLEIKHQLCIFYLYKLIGNDVFKKLKSKFVSYREKINMCLTFT
EIKEIFRTYDVSIAINRLQNLIDGIKKIPYALYRSIDKITRDFNRLTLFMVDGFVSKTTNPIENYYRQTLPNQLKRIFKTPE
Blast result :
Comments
ISM1 is 52% aa similar to ISM1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2003) Direct submision GenBank.
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2003) Direct submision GenBank.