ISMst1
- Family ISNCY
- Group ISM1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007681 | ND | Methanosphaera stadtmanae | Methanosphaera stadtmanae DSM 3091 |
DNA section
IS Length : 1529 bp
Ends
IR Length : 24/26
IRL : GTGGCTTTCCAGTTGCTGGGTCTTGAAAAAGTTTTGATCAAAAAAAATTT
IRR : GTGGCTTTCCAGTTGTCGGGTCTTGATTTTTGAATATTTATTTTTCTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTTTTTGCTTTTTTTCTTTT | CAATTTTC | AAAACATTTATATACTATAATT | 8 |
TTCAAGAAAAATATTTTCTTAT | CCTAAACC | AAAAGAATTAATTAAACATTTA | 8 |
ATTTTTCATATTTTTTTAAA | TCATAACC | AAAACATTTATATATTACTTTCAAT | 8 |
DNA sequence
GTGGCTTTCCAGTTGCTGGGTCTTGAAAAAGTTTTGATCAAAAAAAATTTGAAAATTTATTTGAAGACGTAAAAATTTATTTCTTATCTTAATTTTTATT
AAAATAAGAAAATAACGTTACACTTGAAATACACGACTCATCAAAATTCAACAAAAACTTTAATATAAAAAATAAGAATAATAAACTATTTATTATAGAA
AAGGAATAGATATTAATATGAAAACCCAAATATCTAATTCCTTAAAGGATAATATGTCCTCAATACAACTTAAACTTAACGATTTTGGTCTCAAAGATCC
AATTAAAAAAAATACTGAAGAACTCTTTAAAACTAAAAATACAAGACCTATCAACCAAGAATATGTTTATTTAAATGATAATCACTTTGAATATGATAAC
CCCACCTGTTCACATTGTCACAAAAAACACGAAAAACATAAAGTTATTAAAAAAGGATTCCGAACAAGAAAAGTCAGAACAACAAATAAAACCAAAATAA
CAATATTTTTAAGACGTTATCAATGTAAAACATGTGGAAAAAAATTCCAAACAGAATTATCATGGCTATATGATAAAAATAAAAGATACACTAAACAATT
TTTTGAATTGATAGATAAAATAATGGAATTTAGAAATATACCATTATCTCTACTACAACATATAATAAACGTAGTTCTAAATACTAATATAAATCTTCAA
ACACTTGAATTTTGGATAAAAATAAAAAATAAATTCTCTAGAAACAAAGAATACTTAAAAATAGAACTAATTAAAGATAAAAACATGATAATCAATCATA
ACATCATTGGATCAGGAATTTATAACTACGACGAACAATACATTAAAATCAACGGAAAAAAATACTATCGATTAACACTATACGACTACTCCAAAGACCA
ACCAATCGCAGAACAAATCATAAAGAAAGAATGGAATAAAAAATCACTCTCAAGCAAAACAATAGAAGAATTCATAAAAACAGCAACAAAAGAACGACCA
TTCAAAGCACTAATAACAGACGGAAAAAAACAATACAACGAAATAGCAAAAAAACTACGTGTACAACACCAAACATGCATATTCCACGCAATAAAATACA
TAAAGGACGAAACAAAAAAATACTTAAGATCAAAAACACTATCAACATTAGATAAAATGACAATTGCAAACCAAACATCACAAATATGCCAAATATATAG
GGAATTAAGTCTTTATGATACATACAAAACACTAAATGAACTAAAAGACATAGAAAACCAACTATTAAAACCAATCAAAAAAATACTAAACACCACAGTA
GAAAACAACATAAACAAAATAATAACACACCACTTATACTCTGAAATACCAAGAACAAACAACGCAGTAGAACAATACTACAGAAACTCTTTACCAAAAT
CAAAGAAAAACAAAAAAAGAACCATTGACGGCGTACTAACAACAATAGCAACTGAAATGATGAAAAAATTTAAAAATACAAAAGAAAAATAAATATTCAA
AAATCAAGACCCGACAACTGGAAAGCCAC
AAAATAAGAAAATAACGTTACACTTGAAATACACGACTCATCAAAATTCAACAAAAACTTTAATATAAAAAATAAGAATAATAAACTATTTATTATAGAA
AAGGAATAGATATTAATATGAAAACCCAAATATCTAATTCCTTAAAGGATAATATGTCCTCAATACAACTTAAACTTAACGATTTTGGTCTCAAAGATCC
AATTAAAAAAAATACTGAAGAACTCTTTAAAACTAAAAATACAAGACCTATCAACCAAGAATATGTTTATTTAAATGATAATCACTTTGAATATGATAAC
CCCACCTGTTCACATTGTCACAAAAAACACGAAAAACATAAAGTTATTAAAAAAGGATTCCGAACAAGAAAAGTCAGAACAACAAATAAAACCAAAATAA
CAATATTTTTAAGACGTTATCAATGTAAAACATGTGGAAAAAAATTCCAAACAGAATTATCATGGCTATATGATAAAAATAAAAGATACACTAAACAATT
TTTTGAATTGATAGATAAAATAATGGAATTTAGAAATATACCATTATCTCTACTACAACATATAATAAACGTAGTTCTAAATACTAATATAAATCTTCAA
ACACTTGAATTTTGGATAAAAATAAAAAATAAATTCTCTAGAAACAAAGAATACTTAAAAATAGAACTAATTAAAGATAAAAACATGATAATCAATCATA
ACATCATTGGATCAGGAATTTATAACTACGACGAACAATACATTAAAATCAACGGAAAAAAATACTATCGATTAACACTATACGACTACTCCAAAGACCA
ACCAATCGCAGAACAAATCATAAAGAAAGAATGGAATAAAAAATCACTCTCAAGCAAAACAATAGAAGAATTCATAAAAACAGCAACAAAAGAACGACCA
TTCAAAGCACTAATAACAGACGGAAAAAAACAATACAACGAAATAGCAAAAAAACTACGTGTACAACACCAAACATGCATATTCCACGCAATAAAATACA
TAAAGGACGAAACAAAAAAATACTTAAGATCAAAAACACTATCAACATTAGATAAAATGACAATTGCAAACCAAACATCACAAATATGCCAAATATATAG
GGAATTAAGTCTTTATGATACATACAAAACACTAAATGAACTAAAAGACATAGAAAACCAACTATTAAAACCAATCAAAAAAATACTAAACACCACAGTA
GAAAACAACATAAACAAAATAATAACACACCACTTATACTCTGAAATACCAAGAACAAACAACGCAGTAGAACAATACTACAGAAACTCTTTACCAAAAT
CAAAGAAAAACAAAAAAAGAACCATTGACGGCGTACTAACAACAATAGCAACTGAAATGATGAAAAAATTTAAAAATACAAAAGAAAAATAAATATTCAA
AAATCAAGACCCGACAACTGGAAAGCCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 218 | 1492 | + | No |
Chemistry : Unknow
ORF sequence :
MKTQISNSLKDNMSSIQLKLNDFGLKDPIKKNTEELFKTKNTRPINQEYVYLNDNHFEYDNPTCSHCHKKHEKHKVIKKGFRTRKVRTTNKTKITIFLRR
YQCKTCGKKFQTELSWLYDKNKRYTKQFFELIDKIMEFRNIPLSLLQHIINVVLNTNINLQTLEFWIKIKNKFSRNKEYLKIELIKDKNMIINHNIIGSG
IYNYDEQYIKINGKKYYRLTLYDYSKDQPIAEQIIKKEWNKKSLSSKTIEEFIKTATKERPFKALITDGKKQYNEIAKKLRVQHQTCIFHAIKYIKDETK
KYLRSKTLSTLDKMTIANQTSQICQIYRELSLYDTYKTLNELKDIENQLLKPIKKILNTTVENNINKIITHHLYSEIPRTNNAVEQYYRNSLPKSKKNKK
RTIDGVLTTIATEMMKKFKNTKEK
YQCKTCGKKFQTELSWLYDKNKRYTKQFFELIDKIMEFRNIPLSLLQHIINVVLNTNINLQTLEFWIKIKNKFSRNKEYLKIELIKDKNMIINHNIIGSG
IYNYDEQYIKINGKKYYRLTLYDYSKDQPIAEQIIKKEWNKKSLSSKTIEEFIKTATKERPFKALITDGKKQYNEIAKKLRVQHQTCIFHAIKYIKDETK
KYLRSKTLSTLDKMTIANQTSQICQIYRELSLYDTYKTLNELKDIENQLLKPIKKILNTTVENNINKIITHHLYSEIPRTNNAVEQYYRNSLPKSKKNKK
RTIDGVLTTIATEMMKKFKNTKEK
Blast result :
Comments
ISMst1 is 47% aa similar to ISM1. There are 3 complete and one partial copies in Methanosphaera stadtmanae DSM 3091 genome.
References
1] Fricke,W.F., Seedorf,H., Henne,A., Kruer,M., Liesegang,H., Hedderich,R., Gottschalk,G. and Thauer,R.K. (2006) J. Bacteriol. 188 (2), 642-658