ISMja1
- Family IS6
- Group
Isoform Synonym(s) ISE703
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_000909 | ND | Methanocaldococcus jannaschii | Methanocaldococcus jannaschii DSM 2661 |
DNA section
IS Length : 703 bp
Ends
IR Length : 19/22
IRL : GAGACTGTCAAGTTAAGTTTTTATCAAAATATTGATAAAAAATAATAAAA
IRR : GAGACTGTCAAGTTAATGATTTTACCCAATTGTAGAACATCATGAAGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGACTGTCAAGTTAAGTTTTTATCAAAATATTGATAAAAAATAATAAAATATGAGGCTCACAATAGAAGTTATAAAGGAGAAAATCGTAGAGAGGAAGC
TTTTTAAAAGGAATAGGAAATCGATAGAGGTTAAAATCTTAGCAGGGCTTTTGTATTACCTCGGATTATCGTTAAGGAAGGTAAGTTTATTCCTTTCCCA
ATTCGAAGACATAAGCCACGAATCGGTTAGAATTTATTATCACAAGATTAAAGAAGTTTTAAACGAGCCAGAAAGAAAGGAAAGAAACTTAATTGCAATC
GATGAGATTAAACTAAAGGTTGGAGACAAATATATTTATGCATGGTCTGCCATCGATGTAGAAACGAAAGAATGCTTAGGAGTTTATATATCGAAGACAA
GAAATTACCTCGATACTATATTATTCGTTAAGAGTATATTAAAATTTTGCTCGAATAAGCCAAAGATTTTAGTTGACGGTGGAAAGTGGTATCCGTGGGC
GTTGCGAAAATTAGGCTTAGAATTCGAAAAAGTTAAATTCGGACTAAGAAATTGTGTAGAAAGCTTCTTCTCAGTGCTTAAACGAAGAACAAAAGCATTC
TTTAATAGGTTTCCTAATAATAGTAAATTCGATACAGTTATTAGCTGGATTAAAAGCTTCATGATGTTCTACAATTGGGTAAAATCATTAACTTGACAGT
CTC
TTTTTAAAAGGAATAGGAAATCGATAGAGGTTAAAATCTTAGCAGGGCTTTTGTATTACCTCGGATTATCGTTAAGGAAGGTAAGTTTATTCCTTTCCCA
ATTCGAAGACATAAGCCACGAATCGGTTAGAATTTATTATCACAAGATTAAAGAAGTTTTAAACGAGCCAGAAAGAAAGGAAAGAAACTTAATTGCAATC
GATGAGATTAAACTAAAGGTTGGAGACAAATATATTTATGCATGGTCTGCCATCGATGTAGAAACGAAAGAATGCTTAGGAGTTTATATATCGAAGACAA
GAAATTACCTCGATACTATATTATTCGTTAAGAGTATATTAAAATTTTGCTCGAATAAGCCAAAGATTTTAGTTGACGGTGGAAAGTGGTATCCGTGGGC
GTTGCGAAAATTAGGCTTAGAATTCGAAAAAGTTAAATTCGGACTAAGAAATTGTGTAGAAAGCTTCTTCTCAGTGCTTAAACGAAGAACAAAAGCATTC
TTTAATAGGTTTCCTAATAATAGTAAATTCGATACAGTTATTAGCTGGATTAAAAGCTTCATGATGTTCTACAATTGGGTAAAATCATTAACTTGACAGT
CTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
642 bp | 214 aa | 52 | 693 | + | No |
Chemistry : DDE
ORF sequence :
MRLTIEVIKERIVERKLFKRNRKSIEVKILAGLLYYLGLSLRKVSLFLSQFEDISHESVRIYYHKIKEVLNEPERKERNLIAIDETKLKVGDKYIYAWSA
IDVETKECLGVYISKTRNYLDTILFVKSILKFCSNKPKILVDGGKWYPWALRKLGLEFERVKFGLRNCVESFFSVLKRRTKVFYNRFPNNSKFDTVISWI
KSFMMFYNWMKSLT
IDVETKECLGVYISKTRNYLDTILFVKSILKFCSNKPKILVDGGKWYPWALRKLGLEFERVKFGLRNCVESFFSVLKRRTKVFYNRFPNNSKFDTVISWI
KSFMMFYNWMKSLT
Blast result :
Comments
ISMja1 is 58% aa similar to ISPfu2. There are 2 complete copies and one partial copy in Methanocaldococcus jannaschii DSM 2661 genome and 3 partial copies in large extrachromosomal element.
References
1] Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J.-F.,
Adams,M.D., Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G., Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M.,
Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A., Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J.C (1996) Science 273 (5278), 1058-1073
Adams,M.D., Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G., Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M.,
Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A., Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J.C (1996) Science 273 (5278), 1058-1073