ISMyma2
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Mycobacterium marinum | Mycobacterium marinum 'M' |
DNA section
IS Length : 1679 bp
Ends
IR Length : 14/15
IRL : CCCGGATTTTTCGCGGGATGCCGATGTATCTGGGTGTTGCAACGCGAAAG
IRR : CCTCGATTTTTCGCGCTGGTGGGGTTCGGTGGTGCTGGGCCATGAAAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGGCGCGA | CTAG | CGCCCAGGGC | 4 |
DNA sequence
CCCGGATTTTTCGCGGGATGCCGATGTATCTGGGTGTTGCAACGCGAAAGTGCCTGTCCTGCAAAGAATGATTGGACTTCTCTACGGTTCAACCATCTCG
ACTGGAAGGCACCTCGCAGGTGAAGAGTATCGCGGCGGCGCGGCGGGTGAAAGTGTCGGCGGACGGCCATGGTGTGGTGTCGCACGCCGGGATGGGGCTG
TTGCGGGAGCTGGCCGATCAAACCGGGTTGTCTGAGCAGGTCACAGGGGCTTTATCCGACACGTACAAGGGGCCGTGGGTGTATGCCCCGGGTGCGGTGT
TCGCCGATCTGGCTGCGGCGGTGGCCGACGGAGCGGACTGCATCCATGGAGTCGGACAACTGTGCGGGGATCGTGAGCATGTGTTCGGGGCCAAAGCCTC
CACCACCACGATGTGGCGGCTGGTCGATGAGCGTATCGACGCTGTTCACCTGCCGAAGGTTCGCGCTGCCCGCGCCGCCGCGCGGGCGACGGCCTGGGCT
GGCGGAGCCGCCCCCGCCCGTGGTCAGCCGCTGTGTATCGATATCGATGCCACGCTGGTCATCGACCATTCCGACAACAAGGCCGACGCGGCGCCGACGT
GGAAGAAGTCCTTTGGCCATCACCCGTTGCTGGCGTTTCTGGACCGCCCGGAGATCGCCGGTGGTGAGGCGTTGGCCGGGCTGCTACGCAAAGGCAACGC
CGGTTCCAACACCGCCGCTGACCACGTCACGGTCCTCGACCAGGCGTTGGACTCGCTACCGGCAGATCGGCGTCCTGACCCCGACGCCGAGGGCGCACCG
GCGGTGGTGGTGCGCTGCGACACCGCCGGGGCCACCCATAAGTTCGCCCAGGCCTGCCGTGATCGCGGGGTCGGGTTCTCCTTCGGGTTTCCCGTCGATG
CCCGGGTCTGGGATGCCGTGGACACCCTCAACCTCGCCGAGGGCTGGTACCCGGCGATCGACGCAGGCGGCGAGATCCGTGACGGGGCGTGGGTGGCCGA
GGCCACTAGTCTGGTCAACCTGTGCACCTGGCCGGCCGGGACCCGGCTGGTGCTGCGAAAAGAGCGCCCGCACCCCGGGGCGCAGCTGCGCTTCACCGAC
ATCGACGGCATGCGCATCACCGCGTTCATCACCGACACCGCCCCCGGTGTCATCCCAGGGCAGTTGGCCGGCCTGGAACTGCGACATCGCCAGCACGCCC
GCGTCGAGGACCGTATCCGCGAGGCCAAAGCCGCTGGCCTGGCCAACCTGCCCTGCCATGGCTTTGACCCCAATGCCGCCTGGCTCGAAATCGTGCTGGC
GGCAGCTGATCTAGTTTCCTGGGCCCAACTGATCGGATTCACCGACACCCCGGAGTTGGCCCGCTGTGAGATCGCCTCGTTCCGCTACCGGGTGCTGCAC
GCCGCCGCCCGCATCACCCGATCAGCCCGGCAACTGCGGCTGCGTATCGACGCCACCTGGCGATGGGCCACAGCGATCGCGACCGCCTGGCGGCGCATCC
GAGCCGCCTTCCCCTGACCGCCACAACCCCGCCCCGACGACCCGAAAGACCACCGGCCCCGGAAAGCCCGCACCCAGCGACACGGGACAGTCAAACACAC
CCCAAAGCCCAAAATCGCCATCACTCAGCAATTTTCATGGCCCAGCACCACCGAACCCCACCAGCGCGAAAAATCGAGG
ACTGGAAGGCACCTCGCAGGTGAAGAGTATCGCGGCGGCGCGGCGGGTGAAAGTGTCGGCGGACGGCCATGGTGTGGTGTCGCACGCCGGGATGGGGCTG
TTGCGGGAGCTGGCCGATCAAACCGGGTTGTCTGAGCAGGTCACAGGGGCTTTATCCGACACGTACAAGGGGCCGTGGGTGTATGCCCCGGGTGCGGTGT
TCGCCGATCTGGCTGCGGCGGTGGCCGACGGAGCGGACTGCATCCATGGAGTCGGACAACTGTGCGGGGATCGTGAGCATGTGTTCGGGGCCAAAGCCTC
CACCACCACGATGTGGCGGCTGGTCGATGAGCGTATCGACGCTGTTCACCTGCCGAAGGTTCGCGCTGCCCGCGCCGCCGCGCGGGCGACGGCCTGGGCT
GGCGGAGCCGCCCCCGCCCGTGGTCAGCCGCTGTGTATCGATATCGATGCCACGCTGGTCATCGACCATTCCGACAACAAGGCCGACGCGGCGCCGACGT
GGAAGAAGTCCTTTGGCCATCACCCGTTGCTGGCGTTTCTGGACCGCCCGGAGATCGCCGGTGGTGAGGCGTTGGCCGGGCTGCTACGCAAAGGCAACGC
CGGTTCCAACACCGCCGCTGACCACGTCACGGTCCTCGACCAGGCGTTGGACTCGCTACCGGCAGATCGGCGTCCTGACCCCGACGCCGAGGGCGCACCG
GCGGTGGTGGTGCGCTGCGACACCGCCGGGGCCACCCATAAGTTCGCCCAGGCCTGCCGTGATCGCGGGGTCGGGTTCTCCTTCGGGTTTCCCGTCGATG
CCCGGGTCTGGGATGCCGTGGACACCCTCAACCTCGCCGAGGGCTGGTACCCGGCGATCGACGCAGGCGGCGAGATCCGTGACGGGGCGTGGGTGGCCGA
GGCCACTAGTCTGGTCAACCTGTGCACCTGGCCGGCCGGGACCCGGCTGGTGCTGCGAAAAGAGCGCCCGCACCCCGGGGCGCAGCTGCGCTTCACCGAC
ATCGACGGCATGCGCATCACCGCGTTCATCACCGACACCGCCCCCGGTGTCATCCCAGGGCAGTTGGCCGGCCTGGAACTGCGACATCGCCAGCACGCCC
GCGTCGAGGACCGTATCCGCGAGGCCAAAGCCGCTGGCCTGGCCAACCTGCCCTGCCATGGCTTTGACCCCAATGCCGCCTGGCTCGAAATCGTGCTGGC
GGCAGCTGATCTAGTTTCCTGGGCCCAACTGATCGGATTCACCGACACCCCGGAGTTGGCCCGCTGTGAGATCGCCTCGTTCCGCTACCGGGTGCTGCAC
GCCGCCGCCCGCATCACCCGATCAGCCCGGCAACTGCGGCTGCGTATCGACGCCACCTGGCGATGGGCCACAGCGATCGCGACCGCCTGGCGGCGCATCC
GAGCCGCCTTCCCCTGACCGCCACAACCCCGCCCCGACGACCCGAAAGACCACCGGCCCCGGAAAGCCCGCACCCAGCGACACGGGACAGTCAAACACAC
CCCAAAGCCCAAAATCGCCATCACTCAGCAATTTTCATGGCCCAGCACCACCGAACCCCACCAGCGCGAAAAATCGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1398 bp | 466 aa | 120 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MKSIAAARRVKVSADGHGVVSHAGMGLLRELADQTGLSEQVTGALSDTYKGPWVYAPGAVFADLAAAVADGADCIHGVGQLCGDREHVFGAKASTTTMWR
LVDERIDAVHLPKVRAARAAARATAWAGGAAPARGQPLCIDIDATLVIDHSDNKADAAPTWKKSFGHHPLLAFLDRPEIAGGEALAGLLRKGNAGSNTAA
DHVTVLDQALDSLPADRRPDPDAEGAPAVVVRCDTAGATHKFAQACRDRGVGFSFGFPVDARVWDAVDTLNLAEGWYPAIDAGGEIRDGAWVAEATSLVN
LCTWPAGTRLVLRKERPHPGAQLRFTDIDGMRITAFITDTAPGVIPGQLAGLELRHRQHARVEDRIREAKAAGLANLPCHGFDPNAAWLEIVLAAADLVS
WAQLIGFTDTPELARCEIASFRYRVLHAAARITRSARQLRLRIDATWRWATAIATAWRRIRAAFP
LVDERIDAVHLPKVRAARAAARATAWAGGAAPARGQPLCIDIDATLVIDHSDNKADAAPTWKKSFGHHPLLAFLDRPEIAGGEALAGLLRKGNAGSNTAA
DHVTVLDQALDSLPADRRPDPDAEGAPAVVVRCDTAGATHKFAQACRDRGVGFSFGFPVDARVWDAVDTLNLAEGWYPAIDAGGEIRDGAWVAEATSLVN
LCTWPAGTRLVLRKERPHPGAQLRFTDIDGMRITAFITDTAPGVIPGQLAGLELRHRQHARVEDRIREAKAAGLANLPCHGFDPNAAWLEIVLAAADLVS
WAQLIGFTDTPELARCEIASFRYRVLHAAARITRSARQLRLRIDATWRWATAIATAWRRIRAAFP
Blast result :
Comments
There are eight copies of this element in Mycobacterium marinum 'M'.
ISMyma2 is 58% aa similar to IS1676.
ISMyma2 is 58% aa similar to IS1676.
References
1] Stinear T. (2006) Direct submission GenBank.