ISMma3
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003901 | ND | Methanosarcina mazei | Methanosarcina mazei Go1 |
DNA section
IS Length : 1719 bp
Ends
IR Length : 14/16
IRL : CCTACTCTCGGCAGGTAAACATATAGATTAATATTATTAATTTTATATCT
IRR : CCTACATTCGGCAGGTTGACGTAATTAGAGATAGATATTTTCATATTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGTCAAAATGC | ATCCCAA | CGTCTTTGAGGCTT | 7 |
DNA sequence
CCTACTCTCGGCAGGTAAACATATAGATTAATATTATTAATTTTATATCTCTTTCCTGGTCTTCCCATGTCAGAGAAAAACAGTAGTAGAAGAGTTGAAT
CTTCCTTAAAACGTACAAGGTTCTTAGGTCACCTTGGTCTCATGGCTGGAGTTTTCAGAGAACTTGAAGTTGACAAACTGATCGATGAGAAACTTCCCAA
GGAAAGGGATCACAATGTTCCTCACTCAGTTTGCATCCTTGCCATGGTACTCAATGGTCTTGGTTTCATAGGGCAACGTCTGTACCTTTTTCCTGATTTT
TTCAAAAACATTTCTACTGAAAGGCTTTTCGGAGACAATGTAACAAGAGAAGACCTGAATCAATATGCTATCGGAGAGACTCTTGATAGAATCGTAAAAT
ATGGCCCTACAAAACTGTTTACGGAAATTGCTCTTCACATTATGGCTCGTCTACCTATTCCTGTTCACTGTTTACACGCTGACACTACAAGTGTCAGCGT
TTATGGGGATTATGAAGACGAAGAAACTGAGTCTATTGATATTACTTTTGGAATTCCCAAAAACGGAAGATGGGACCTCAAACAATTTGTACTGAGCTTG
ATTGTTAATCAGCATGGCATACCTCTTTTCATGAACACCCATTCAGGAAATGCTTCCGACAAAAACACAATTCTGGAAGCTATCAACTCTCTTAAATCAG
TTCTAAGGCCTGAAAGCAAAGTGTACTATGTCGCTGATAGTTCCTTTTACACAGACAATAATATCAAGAACATAGGAACGTCATTCTGGATCAGTCGCGT
TCCTGCAACAATTACCGAGGCAAAGGAACTGTTAGCTGCAAATCTGAACCTGAAAACGCTAAAAAGCGACGAAAGATACTCATTTTATCAAACCTTTGTG
GAATATGGTGGAGTTAAACAAAAGTGGGTTTTGCTGCTTTCTCACAAGATGAAAGAGAAAAAAGAGCAAACTCTCAGAACAAAGCTTGACAAAGAGTTTG
AAAAAGCAGAGAAGTCTTTTAAAAAGCTGAAAGGAGAGGACTTCTTCTGTGAAGATGATGCATTAAAAGCCGCAGAGAAATGGATTCAAGATTTCCCCTC
AATTGTGTTTGAAAATGTTGATTTGAAAGCCATTAAAAAACGTGAATCGGGTAAAAGAGGCAGACCTTCAAAAGATGAGAAATTAAAGACTTATTACAGG
ATTGATGGCAGTTTAAAGACTAATGAAGCTTTTGTTTTGAAAGAAATGGAGAAAATGGGACTTTTCATTCTTGCAAGTAATGATATCAGTATTTCTCCTG
AAGATATGCTGAAGTATTACAAAGGACAGGACAATGTAGAAAAAGGATTCAGGTTCTTGAAAAGTGATACGTTTAGCATATCGAAAGTTTACCTCAAGAA
AAAATCCCGAATTGAAGCACTGACTATGATAATGGTTCTCTGCTTAATGATTTATTCAATTGCAGAATGGAAATTAAGAACAAAGTTAGAAGAAGAAAAT
GAAACGGTTCCAGATCAAAAAGGGAAGCCAACAAAAAGACCTACAATGAGATGGATATTTTTCAATTTCCAGGGAATTACAGAACTTAGGATTCAGAAAC
AAGGAGAAATAGAGTCCGAAATATTGAATATGGAGGATATTCACTGGAAGATACTGAGGCTCATGGGAGAAAAATATGAAAATATCTATCTCTAATTACG
TCAACCTGCCGAATGTAGG
CTTCCTTAAAACGTACAAGGTTCTTAGGTCACCTTGGTCTCATGGCTGGAGTTTTCAGAGAACTTGAAGTTGACAAACTGATCGATGAGAAACTTCCCAA
GGAAAGGGATCACAATGTTCCTCACTCAGTTTGCATCCTTGCCATGGTACTCAATGGTCTTGGTTTCATAGGGCAACGTCTGTACCTTTTTCCTGATTTT
TTCAAAAACATTTCTACTGAAAGGCTTTTCGGAGACAATGTAACAAGAGAAGACCTGAATCAATATGCTATCGGAGAGACTCTTGATAGAATCGTAAAAT
ATGGCCCTACAAAACTGTTTACGGAAATTGCTCTTCACATTATGGCTCGTCTACCTATTCCTGTTCACTGTTTACACGCTGACACTACAAGTGTCAGCGT
TTATGGGGATTATGAAGACGAAGAAACTGAGTCTATTGATATTACTTTTGGAATTCCCAAAAACGGAAGATGGGACCTCAAACAATTTGTACTGAGCTTG
ATTGTTAATCAGCATGGCATACCTCTTTTCATGAACACCCATTCAGGAAATGCTTCCGACAAAAACACAATTCTGGAAGCTATCAACTCTCTTAAATCAG
TTCTAAGGCCTGAAAGCAAAGTGTACTATGTCGCTGATAGTTCCTTTTACACAGACAATAATATCAAGAACATAGGAACGTCATTCTGGATCAGTCGCGT
TCCTGCAACAATTACCGAGGCAAAGGAACTGTTAGCTGCAAATCTGAACCTGAAAACGCTAAAAAGCGACGAAAGATACTCATTTTATCAAACCTTTGTG
GAATATGGTGGAGTTAAACAAAAGTGGGTTTTGCTGCTTTCTCACAAGATGAAAGAGAAAAAAGAGCAAACTCTCAGAACAAAGCTTGACAAAGAGTTTG
AAAAAGCAGAGAAGTCTTTTAAAAAGCTGAAAGGAGAGGACTTCTTCTGTGAAGATGATGCATTAAAAGCCGCAGAGAAATGGATTCAAGATTTCCCCTC
AATTGTGTTTGAAAATGTTGATTTGAAAGCCATTAAAAAACGTGAATCGGGTAAAAGAGGCAGACCTTCAAAAGATGAGAAATTAAAGACTTATTACAGG
ATTGATGGCAGTTTAAAGACTAATGAAGCTTTTGTTTTGAAAGAAATGGAGAAAATGGGACTTTTCATTCTTGCAAGTAATGATATCAGTATTTCTCCTG
AAGATATGCTGAAGTATTACAAAGGACAGGACAATGTAGAAAAAGGATTCAGGTTCTTGAAAAGTGATACGTTTAGCATATCGAAAGTTTACCTCAAGAA
AAAATCCCGAATTGAAGCACTGACTATGATAATGGTTCTCTGCTTAATGATTTATTCAATTGCAGAATGGAAATTAAGAACAAAGTTAGAAGAAGAAAAT
GAAACGGTTCCAGATCAAAAAGGGAAGCCAACAAAAAGACCTACAATGAGATGGATATTTTTCAATTTCCAGGGAATTACAGAACTTAGGATTCAGAAAC
AAGGAGAAATAGAGTCCGAAATATTGAATATGGAGGATATTCACTGGAAGATACTGAGGCTCATGGGAGAAAAATATGAAAATATCTATCTCTAATTACG
TCAACCTGCCGAATGTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1629 bp | 542 aa | 67 | 1695 | + | No |
Chemistry : DDE
ORF sequence :
MSEKNSSRRVESSLKRTRFLGHLGLMAGVFRELEVDKLIDEKLPKERDHNVPHSVCILAMVLNGLGFIGQRLYLFPDFFKNISTERLFGDNVTREDLNQY
AIGETLDRIVKYGPTKLFTEIALHIMARLPIPVHCLHADTTSVSVYGDYEDEETESIDITFGIPKNGRWDLKQFVLSLIVNQHGIPLFMNTHSGNASDKN
TILEAINSLKSVLRPESKVYYVADSSFYTDNNIKNIGTSFWISRVPATITEAKELLAANLNLKTLKSDERYSFYQTFVEYGGVKQKWVLLLSHKMKEKKE
QTLRTKLDKEFEKAEKSFKKLKGEDFFCEDDALKAAEKWIQDFPSIVFENVDLKAIKKRESGKRGRPSKDEKLKTYYRIDGSLKTNEAFVLKEMEKMGLF
ILASNDISISPEDMLKYYKGQDNVEKGFRFLKSDTFSISKVYLKKKSRIEALTMIMVLCLMIYSIAEWKLRTKLEEENETVPDQKGKPTKRPTMRWIFFN
FQGITELRIQKQGEIESEILNMEDIHWKILRLMGEKYENIYL
AIGETLDRIVKYGPTKLFTEIALHIMARLPIPVHCLHADTTSVSVYGDYEDEETESIDITFGIPKNGRWDLKQFVLSLIVNQHGIPLFMNTHSGNASDKN
TILEAINSLKSVLRPESKVYYVADSSFYTDNNIKNIGTSFWISRVPATITEAKELLAANLNLKTLKSDERYSFYQTFVEYGGVKQKWVLLLSHKMKEKKE
QTLRTKLDKEFEKAEKSFKKLKGEDFFCEDDALKAAEKWIQDFPSIVFENVDLKAIKKRESGKRGRPSKDEKLKTYYRIDGSLKTNEAFVLKEMEKMGLF
ILASNDISISPEDMLKYYKGQDNVEKGFRFLKSDTFSISKVYLKKKSRIEALTMIMVLCLMIYSIAEWKLRTKLEEENETVPDQKGKPTKRPTMRWIFFN
FQGITELRIQKQGEIESEILNMEDIHWKILRLMGEKYENIYL
Blast result :
Comments
ISMma3 is 91% aa similar to ISMac5. There are two full copies in Mathanosarcina mazei Go1 genome.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461